Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3097

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrbr and PerR are separated by 44 nucleotidesPerR and DVU3097 are separated by 325 nucleotidesDVU3097 and DVU3098 are separated by 136 nucleotidesDVU3098 and tolQ-2 are separated by 43 nucleotides DVU3094: rbr - rubrerythrin (TIGR), at 3,236,764 to 3,237,339 rbr DVU3095: PerR - peroxide-responsive regulator PerR (Dmitry Rodionov), at 3,237,384 to 3,237,770 PerR DVU3097: DVU3097 - outer membrane efflux protein (TIGR), at 3,238,096 to 3,239,415 DVU3097 DVU3098: DVU3098 - hypothetical protein (TIGR), at 3,239,552 to 3,239,755 DVU3098 DVU3099: tolQ-2 - tolQ protein (TIGR), at 3,239,799 to 3,240,491 tolQ-2 Position (kb) 3238 3239 3240Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3237.143 kb on - strand, within rbrat 3237.292 kb on + strandat 3237.353 kb on - strandat 3237.372 kb on - strandat 3237.387 kb on + strandat 3237.395 kb on - strandat 3237.395 kb on - strandat 3237.395 kb on - strandat 3237.827 kb on - strandat 3237.880 kb on + strandat 3237.888 kb on + strandat 3237.940 kb on - strandat 3237.940 kb on - strandat 3237.940 kb on - strandat 3238.035 kb on - strandat 3238.036 kb on - strandat 3238.036 kb on - strandat 3238.046 kb on - strandat 3238.047 kb on - strandat 3238.093 kb on + strandat 3238.093 kb on + strandat 3238.183 kb on - strandat 3238.227 kb on + strandat 3238.279 kb on + strand, within DVU3097at 3238.370 kb on - strand, within DVU3097at 3238.431 kb on + strand, within DVU3097at 3238.475 kb on - strand, within DVU3097at 3238.554 kb on + strand, within DVU3097at 3238.564 kb on + strand, within DVU3097at 3238.579 kb on + strand, within DVU3097at 3238.581 kb on + strand, within DVU3097at 3238.589 kb on - strand, within DVU3097at 3238.589 kb on - strand, within DVU3097at 3238.651 kb on + strand, within DVU3097at 3238.678 kb on - strand, within DVU3097at 3238.678 kb on - strand, within DVU3097at 3238.719 kb on - strand, within DVU3097at 3238.792 kb on - strand, within DVU3097at 3238.802 kb on - strand, within DVU3097at 3238.826 kb on + strand, within DVU3097at 3238.840 kb on - strand, within DVU3097at 3238.907 kb on + strand, within DVU3097at 3238.907 kb on + strand, within DVU3097at 3238.910 kb on - strand, within DVU3097at 3238.915 kb on - strand, within DVU3097at 3238.915 kb on - strand, within DVU3097at 3238.929 kb on + strand, within DVU3097at 3238.929 kb on + strand, within DVU3097at 3238.978 kb on + strand, within DVU3097at 3239.047 kb on - strand, within DVU3097at 3239.056 kb on - strand, within DVU3097at 3239.071 kb on - strand, within DVU3097at 3239.075 kb on + strand, within DVU3097at 3239.198 kb on + strand, within DVU3097at 3239.206 kb on - strand, within DVU3097at 3239.242 kb on + strand, within DVU3097at 3239.244 kb on - strand, within DVU3097at 3239.255 kb on - strand, within DVU3097at 3239.392 kb on - strandat 3239.547 kb on - strandat 3239.605 kb on - strand, within DVU3098at 3239.672 kb on + strand, within DVU3098at 3239.698 kb on + strand, within DVU3098at 3239.706 kb on - strand, within DVU3098at 3239.718 kb on + strand, within DVU3098at 3239.783 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,237,143 - rbr DVU3094 0.66 -0.3
3,237,292 + +0.3
3,237,353 - +0.3
3,237,372 - -0.2
3,237,387 + -0.3
3,237,395 - -0.1
3,237,395 - +0.0
3,237,395 - -0.2
3,237,827 - +0.0
3,237,880 + +0.1
3,237,888 + +0.8
3,237,940 - -0.4
3,237,940 - +1.3
3,237,940 - +0.2
3,238,035 - -1.8
3,238,036 - -0.0
3,238,036 - -1.2
3,238,046 - +0.5
3,238,047 - +2.0
3,238,093 + -0.5
3,238,093 + -0.3
3,238,183 - -1.7
3,238,227 + -1.1
3,238,279 + DVU3097 0.14 -2.4
3,238,370 - DVU3097 0.21 -2.8
3,238,431 + DVU3097 0.25 -3.4
3,238,475 - DVU3097 0.29 -2.5
3,238,554 + DVU3097 0.35 -2.0
3,238,564 + DVU3097 0.35 -4.2
3,238,579 + DVU3097 0.37 -0.9
3,238,581 + DVU3097 0.37 -3.3
3,238,589 - DVU3097 0.37 -1.1
3,238,589 - DVU3097 0.37 -1.6
3,238,651 + DVU3097 0.42 -3.1
3,238,678 - DVU3097 0.44 -3.3
3,238,678 - DVU3097 0.44 -3.1
3,238,719 - DVU3097 0.47 -2.9
3,238,792 - DVU3097 0.53 -4.3
3,238,802 - DVU3097 0.53 -3.1
3,238,826 + DVU3097 0.55 -4.2
3,238,840 - DVU3097 0.56 -2.8
3,238,907 + DVU3097 0.61 -3.1
3,238,907 + DVU3097 0.61 -3.0
3,238,910 - DVU3097 0.62 -2.9
3,238,915 - DVU3097 0.62 -2.9
3,238,915 - DVU3097 0.62 -2.6
3,238,929 + DVU3097 0.63 -1.6
3,238,929 + DVU3097 0.63 -4.4
3,238,978 + DVU3097 0.67 -4.0
3,239,047 - DVU3097 0.72 -3.3
3,239,056 - DVU3097 0.73 -3.5
3,239,071 - DVU3097 0.74 -2.4
3,239,075 + DVU3097 0.74 -1.2
3,239,198 + DVU3097 0.83 -2.2
3,239,206 - DVU3097 0.84 -2.5
3,239,242 + DVU3097 0.87 -3.9
3,239,244 - DVU3097 0.87 -3.2
3,239,255 - DVU3097 0.88 -0.3
3,239,392 - -2.4
3,239,547 - -0.9
3,239,605 - DVU3098 0.26 -0.1
3,239,672 + DVU3098 0.59 -0.4
3,239,698 + DVU3098 0.72 -0.2
3,239,706 - DVU3098 0.75 -0.4
3,239,718 + DVU3098 0.81 -0.1
3,239,783 + +0.0

Or see this region's nucleotide sequence