Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbr and PerR are separated by 44 nucleotides PerR and DVU3097 are separated by 325 nucleotides DVU3097 and DVU3098 are separated by 136 nucleotides DVU3098 and tolQ-2 are separated by 43 nucleotides
DVU3094: rbr - rubrerythrin (TIGR), at 3,236,764 to 3,237,339
rbr
DVU3095: PerR - peroxide-responsive regulator PerR (Dmitry Rodionov), at 3,237,384 to 3,237,770
PerR
DVU3097: DVU3097 - outer membrane efflux protein (TIGR), at 3,238,096 to 3,239,415
DVU3097
DVU3098: DVU3098 - hypothetical protein (TIGR), at 3,239,552 to 3,239,755
DVU3098
DVU3099: tolQ-2 - tolQ protein (TIGR), at 3,239,799 to 3,240,491
tolQ-2
Position (kb)
3238
3239
3240 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3237.143 kb on - strand, within rbr at 3237.292 kb on + strand at 3237.353 kb on - strand at 3237.372 kb on - strand at 3237.387 kb on + strand at 3237.395 kb on - strand at 3237.395 kb on - strand at 3237.395 kb on - strand at 3237.827 kb on - strand at 3237.880 kb on + strand at 3237.888 kb on + strand at 3237.940 kb on - strand at 3237.940 kb on - strand at 3237.940 kb on - strand at 3238.035 kb on - strand at 3238.036 kb on - strand at 3238.036 kb on - strand at 3238.046 kb on - strand at 3238.047 kb on - strand at 3238.093 kb on + strand at 3238.093 kb on + strand at 3238.183 kb on - strand at 3238.227 kb on + strand at 3238.279 kb on + strand, within DVU3097 at 3238.370 kb on - strand, within DVU3097 at 3238.431 kb on + strand, within DVU3097 at 3238.475 kb on - strand, within DVU3097 at 3238.554 kb on + strand, within DVU3097 at 3238.564 kb on + strand, within DVU3097 at 3238.579 kb on + strand, within DVU3097 at 3238.581 kb on + strand, within DVU3097 at 3238.589 kb on - strand, within DVU3097 at 3238.589 kb on - strand, within DVU3097 at 3238.651 kb on + strand, within DVU3097 at 3238.678 kb on - strand, within DVU3097 at 3238.678 kb on - strand, within DVU3097 at 3238.719 kb on - strand, within DVU3097 at 3238.792 kb on - strand, within DVU3097 at 3238.802 kb on - strand, within DVU3097 at 3238.826 kb on + strand, within DVU3097 at 3238.840 kb on - strand, within DVU3097 at 3238.907 kb on + strand, within DVU3097 at 3238.907 kb on + strand, within DVU3097 at 3238.910 kb on - strand, within DVU3097 at 3238.915 kb on - strand, within DVU3097 at 3238.915 kb on - strand, within DVU3097 at 3238.929 kb on + strand, within DVU3097 at 3238.929 kb on + strand, within DVU3097 at 3238.978 kb on + strand, within DVU3097 at 3239.047 kb on - strand, within DVU3097 at 3239.056 kb on - strand, within DVU3097 at 3239.071 kb on - strand, within DVU3097 at 3239.075 kb on + strand, within DVU3097 at 3239.198 kb on + strand, within DVU3097 at 3239.206 kb on - strand, within DVU3097 at 3239.242 kb on + strand, within DVU3097 at 3239.244 kb on - strand, within DVU3097 at 3239.255 kb on - strand, within DVU3097 at 3239.392 kb on - strand at 3239.547 kb on - strand at 3239.605 kb on - strand, within DVU3098 at 3239.672 kb on + strand, within DVU3098 at 3239.698 kb on + strand, within DVU3098 at 3239.706 kb on - strand, within DVU3098 at 3239.718 kb on + strand, within DVU3098 at 3239.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 3,237,143 - rbr DVU3094 0.66 -0.3 3,237,292 + +0.3 3,237,353 - +0.3 3,237,372 - -0.2 3,237,387 + -0.3 3,237,395 - -0.1 3,237,395 - +0.0 3,237,395 - -0.2 3,237,827 - +0.0 3,237,880 + +0.1 3,237,888 + +0.8 3,237,940 - -0.4 3,237,940 - +1.3 3,237,940 - +0.2 3,238,035 - -1.8 3,238,036 - -0.0 3,238,036 - -1.2 3,238,046 - +0.5 3,238,047 - +2.0 3,238,093 + -0.5 3,238,093 + -0.3 3,238,183 - -1.7 3,238,227 + -1.1 3,238,279 + DVU3097 0.14 -2.4 3,238,370 - DVU3097 0.21 -2.8 3,238,431 + DVU3097 0.25 -3.4 3,238,475 - DVU3097 0.29 -2.5 3,238,554 + DVU3097 0.35 -2.0 3,238,564 + DVU3097 0.35 -4.2 3,238,579 + DVU3097 0.37 -0.9 3,238,581 + DVU3097 0.37 -3.3 3,238,589 - DVU3097 0.37 -1.1 3,238,589 - DVU3097 0.37 -1.6 3,238,651 + DVU3097 0.42 -3.1 3,238,678 - DVU3097 0.44 -3.3 3,238,678 - DVU3097 0.44 -3.1 3,238,719 - DVU3097 0.47 -2.9 3,238,792 - DVU3097 0.53 -4.3 3,238,802 - DVU3097 0.53 -3.1 3,238,826 + DVU3097 0.55 -4.2 3,238,840 - DVU3097 0.56 -2.8 3,238,907 + DVU3097 0.61 -3.1 3,238,907 + DVU3097 0.61 -3.0 3,238,910 - DVU3097 0.62 -2.9 3,238,915 - DVU3097 0.62 -2.9 3,238,915 - DVU3097 0.62 -2.6 3,238,929 + DVU3097 0.63 -1.6 3,238,929 + DVU3097 0.63 -4.4 3,238,978 + DVU3097 0.67 -4.0 3,239,047 - DVU3097 0.72 -3.3 3,239,056 - DVU3097 0.73 -3.5 3,239,071 - DVU3097 0.74 -2.4 3,239,075 + DVU3097 0.74 -1.2 3,239,198 + DVU3097 0.83 -2.2 3,239,206 - DVU3097 0.84 -2.5 3,239,242 + DVU3097 0.87 -3.9 3,239,244 - DVU3097 0.87 -3.2 3,239,255 - DVU3097 0.88 -0.3 3,239,392 - -2.4 3,239,547 - -0.9 3,239,605 - DVU3098 0.26 -0.1 3,239,672 + DVU3098 0.59 -0.4 3,239,698 + DVU3098 0.72 -0.2 3,239,706 - DVU3098 0.75 -0.4 3,239,718 + DVU3098 0.81 -0.1 3,239,783 + +0.0
Or see this region's nucleotide sequence