Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3091

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3090 and DVU3091 are separated by 473 nucleotidesDVU3091 and DVU3092 are separated by 214 nucleotidesDVU3092 and rdl are separated by 43 nucleotides DVU3090: DVU3090 - outer membrane protein, OMPP1/FadL/TodX family (TIGR), at 3,232,587 to 3,233,792 DVU3090 DVU3091: DVU3091 - conserved hypothetical protein (TIGR), at 3,234,266 to 3,235,612 DVU3091 DVU3092: DVU3092 - hypothetical protein (TIGR), at 3,235,827 to 3,236,474 DVU3092 DVU3093: rdl - rubredoxin-like protein (TIGR), at 3,236,518 to 3,236,745 rdl Position (kb) 3234 3235 3236Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3233.333 kb on - strand, within DVU3090at 3233.405 kb on + strand, within DVU3090at 3233.418 kb on - strand, within DVU3090at 3233.438 kb on + strand, within DVU3090at 3233.456 kb on - strand, within DVU3090at 3233.515 kb on + strand, within DVU3090at 3233.515 kb on + strand, within DVU3090at 3233.563 kb on - strand, within DVU3090at 3233.567 kb on + strand, within DVU3090at 3233.576 kb on + strand, within DVU3090at 3233.584 kb on - strand, within DVU3090at 3233.627 kb on + strand, within DVU3090at 3233.642 kb on + strand, within DVU3090at 3233.662 kb on - strand, within DVU3090at 3233.846 kb on - strandat 3233.896 kb on - strandat 3234.051 kb on + strandat 3234.252 kb on + strandat 3234.258 kb on + strandat 3234.360 kb on - strandat 3234.376 kb on + strandat 3234.402 kb on + strand, within DVU3091at 3234.423 kb on + strand, within DVU3091at 3234.492 kb on - strand, within DVU3091at 3234.505 kb on + strand, within DVU3091at 3234.563 kb on + strand, within DVU3091at 3234.709 kb on - strand, within DVU3091at 3234.873 kb on + strand, within DVU3091at 3234.873 kb on + strand, within DVU3091at 3234.874 kb on - strand, within DVU3091at 3234.881 kb on - strand, within DVU3091at 3234.881 kb on - strand, within DVU3091at 3234.881 kb on - strand, within DVU3091at 3234.881 kb on - strand, within DVU3091at 3234.902 kb on + strand, within DVU3091at 3235.008 kb on - strand, within DVU3091at 3235.069 kb on + strand, within DVU3091at 3235.188 kb on + strand, within DVU3091at 3235.227 kb on - strand, within DVU3091at 3235.253 kb on + strand, within DVU3091at 3235.253 kb on + strand, within DVU3091at 3235.261 kb on - strand, within DVU3091at 3235.272 kb on + strand, within DVU3091at 3235.280 kb on + strand, within DVU3091at 3235.288 kb on - strand, within DVU3091at 3235.290 kb on + strand, within DVU3091at 3235.293 kb on - strand, within DVU3091at 3235.472 kb on + strand, within DVU3091at 3235.490 kb on + strandat 3235.557 kb on + strandat 3235.599 kb on + strandat 3235.606 kb on + strandat 3235.669 kb on - strandat 3235.806 kb on - strandat 3235.942 kb on - strand, within DVU3092at 3235.942 kb on - strand, within DVU3092at 3235.956 kb on + strand, within DVU3092at 3236.076 kb on + strand, within DVU3092at 3236.143 kb on + strand, within DVU3092at 3236.151 kb on - strand, within DVU3092at 3236.251 kb on + strand, within DVU3092at 3236.254 kb on - strand, within DVU3092at 3236.256 kb on + strand, within DVU3092at 3236.256 kb on + strand, within DVU3092at 3236.256 kb on + strand, within DVU3092at 3236.260 kb on + strand, within DVU3092at 3236.262 kb on + strand, within DVU3092at 3236.264 kb on - strand, within DVU3092at 3236.264 kb on - strand, within DVU3092at 3236.462 kb on - strandat 3236.572 kb on - strand, within rdl

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,233,333 - DVU3090 0.62 +0.5
3,233,405 + DVU3090 0.68 +0.3
3,233,418 - DVU3090 0.69 -0.3
3,233,438 + DVU3090 0.71 -0.4
3,233,456 - DVU3090 0.72 +0.5
3,233,515 + DVU3090 0.77 -0.3
3,233,515 + DVU3090 0.77 -1.2
3,233,563 - DVU3090 0.81 +1.0
3,233,567 + DVU3090 0.81 +0.6
3,233,576 + DVU3090 0.82 -1.2
3,233,584 - DVU3090 0.83 +1.9
3,233,627 + DVU3090 0.86 +0.2
3,233,642 + DVU3090 0.87 -0.9
3,233,662 - DVU3090 0.89 -0.0
3,233,846 - -0.3
3,233,896 - -1.1
3,234,051 + -2.7
3,234,252 + -0.3
3,234,258 + +1.7
3,234,360 - -0.6
3,234,376 + -0.5
3,234,402 + DVU3091 0.10 -0.1
3,234,423 + DVU3091 0.12 +0.1
3,234,492 - DVU3091 0.17 -2.8
3,234,505 + DVU3091 0.18 -2.5
3,234,563 + DVU3091 0.22 +0.6
3,234,709 - DVU3091 0.33 -0.5
3,234,873 + DVU3091 0.45 -0.6
3,234,873 + DVU3091 0.45 -0.3
3,234,874 - DVU3091 0.45 -0.5
3,234,881 - DVU3091 0.46 -0.4
3,234,881 - DVU3091 0.46 -0.1
3,234,881 - DVU3091 0.46 +0.5
3,234,881 - DVU3091 0.46 +0.0
3,234,902 + DVU3091 0.47 +0.1
3,235,008 - DVU3091 0.55 -0.5
3,235,069 + DVU3091 0.60 -0.8
3,235,188 + DVU3091 0.68 -0.8
3,235,227 - DVU3091 0.71 -1.4
3,235,253 + DVU3091 0.73 -1.7
3,235,253 + DVU3091 0.73 -0.2
3,235,261 - DVU3091 0.74 -0.4
3,235,272 + DVU3091 0.75 -0.1
3,235,280 + DVU3091 0.75 +0.4
3,235,288 - DVU3091 0.76 -0.2
3,235,290 + DVU3091 0.76 -0.5
3,235,293 - DVU3091 0.76 +0.6
3,235,472 + DVU3091 0.90 -0.1
3,235,490 + +0.0
3,235,557 + -0.1
3,235,599 + +0.1
3,235,606 + -1.1
3,235,669 - -0.2
3,235,806 - -0.4
3,235,942 - DVU3092 0.18 -0.0
3,235,942 - DVU3092 0.18 -0.3
3,235,956 + DVU3092 0.20 -0.8
3,236,076 + DVU3092 0.38 +0.3
3,236,143 + DVU3092 0.49 +1.1
3,236,151 - DVU3092 0.50 +1.6
3,236,251 + DVU3092 0.65 -0.6
3,236,254 - DVU3092 0.66 -0.7
3,236,256 + DVU3092 0.66 -0.0
3,236,256 + DVU3092 0.66 +0.2
3,236,256 + DVU3092 0.66 -0.7
3,236,260 + DVU3092 0.67 -0.2
3,236,262 + DVU3092 0.67 -0.4
3,236,264 - DVU3092 0.67 -1.0
3,236,264 - DVU3092 0.67 +0.4
3,236,462 - +0.6
3,236,572 - rdl DVU3093 0.24 -0.3

Or see this region's nucleotide sequence