Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3090 and DVU3091 are separated by 473 nucleotides DVU3091 and DVU3092 are separated by 214 nucleotides DVU3092 and rdl are separated by 43 nucleotides
DVU3090: DVU3090 - outer membrane protein, OMPP1/FadL/TodX family (TIGR), at 3,232,587 to 3,233,792
DVU3090
DVU3091: DVU3091 - conserved hypothetical protein (TIGR), at 3,234,266 to 3,235,612
DVU3091
DVU3092: DVU3092 - hypothetical protein (TIGR), at 3,235,827 to 3,236,474
DVU3092
DVU3093: rdl - rubredoxin-like protein (TIGR), at 3,236,518 to 3,236,745
rdl
Position (kb)
3234
3235
3236 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3233.333 kb on - strand, within DVU3090 at 3233.405 kb on + strand, within DVU3090 at 3233.418 kb on - strand, within DVU3090 at 3233.438 kb on + strand, within DVU3090 at 3233.456 kb on - strand, within DVU3090 at 3233.515 kb on + strand, within DVU3090 at 3233.515 kb on + strand, within DVU3090 at 3233.563 kb on - strand, within DVU3090 at 3233.567 kb on + strand, within DVU3090 at 3233.576 kb on + strand, within DVU3090 at 3233.584 kb on - strand, within DVU3090 at 3233.627 kb on + strand, within DVU3090 at 3233.642 kb on + strand, within DVU3090 at 3233.662 kb on - strand, within DVU3090 at 3233.846 kb on - strand at 3233.896 kb on - strand at 3234.051 kb on + strand at 3234.252 kb on + strand at 3234.258 kb on + strand at 3234.360 kb on - strand at 3234.376 kb on + strand at 3234.402 kb on + strand, within DVU3091 at 3234.423 kb on + strand, within DVU3091 at 3234.492 kb on - strand, within DVU3091 at 3234.505 kb on + strand, within DVU3091 at 3234.563 kb on + strand, within DVU3091 at 3234.709 kb on - strand, within DVU3091 at 3234.873 kb on + strand, within DVU3091 at 3234.873 kb on + strand, within DVU3091 at 3234.874 kb on - strand, within DVU3091 at 3234.881 kb on - strand, within DVU3091 at 3234.881 kb on - strand, within DVU3091 at 3234.881 kb on - strand, within DVU3091 at 3234.881 kb on - strand, within DVU3091 at 3234.902 kb on + strand, within DVU3091 at 3235.008 kb on - strand, within DVU3091 at 3235.069 kb on + strand, within DVU3091 at 3235.188 kb on + strand, within DVU3091 at 3235.227 kb on - strand, within DVU3091 at 3235.253 kb on + strand, within DVU3091 at 3235.253 kb on + strand, within DVU3091 at 3235.261 kb on - strand, within DVU3091 at 3235.272 kb on + strand, within DVU3091 at 3235.280 kb on + strand, within DVU3091 at 3235.288 kb on - strand, within DVU3091 at 3235.290 kb on + strand, within DVU3091 at 3235.293 kb on - strand, within DVU3091 at 3235.472 kb on + strand, within DVU3091 at 3235.490 kb on + strand at 3235.557 kb on + strand at 3235.599 kb on + strand at 3235.606 kb on + strand at 3235.669 kb on - strand at 3235.806 kb on - strand at 3235.942 kb on - strand, within DVU3092 at 3235.942 kb on - strand, within DVU3092 at 3235.956 kb on + strand, within DVU3092 at 3236.076 kb on + strand, within DVU3092 at 3236.143 kb on + strand, within DVU3092 at 3236.151 kb on - strand, within DVU3092 at 3236.251 kb on + strand, within DVU3092 at 3236.254 kb on - strand, within DVU3092 at 3236.256 kb on + strand, within DVU3092 at 3236.256 kb on + strand, within DVU3092 at 3236.256 kb on + strand, within DVU3092 at 3236.260 kb on + strand, within DVU3092 at 3236.262 kb on + strand, within DVU3092 at 3236.264 kb on - strand, within DVU3092 at 3236.264 kb on - strand, within DVU3092 at 3236.462 kb on - strand at 3236.572 kb on - strand, within rdl
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 3,233,333 - DVU3090 0.62 +0.5 3,233,405 + DVU3090 0.68 +0.3 3,233,418 - DVU3090 0.69 -0.3 3,233,438 + DVU3090 0.71 -0.4 3,233,456 - DVU3090 0.72 +0.5 3,233,515 + DVU3090 0.77 -0.3 3,233,515 + DVU3090 0.77 -1.2 3,233,563 - DVU3090 0.81 +1.0 3,233,567 + DVU3090 0.81 +0.6 3,233,576 + DVU3090 0.82 -1.2 3,233,584 - DVU3090 0.83 +1.9 3,233,627 + DVU3090 0.86 +0.2 3,233,642 + DVU3090 0.87 -0.9 3,233,662 - DVU3090 0.89 -0.0 3,233,846 - -0.3 3,233,896 - -1.1 3,234,051 + -2.7 3,234,252 + -0.3 3,234,258 + +1.7 3,234,360 - -0.6 3,234,376 + -0.5 3,234,402 + DVU3091 0.10 -0.1 3,234,423 + DVU3091 0.12 +0.1 3,234,492 - DVU3091 0.17 -2.8 3,234,505 + DVU3091 0.18 -2.5 3,234,563 + DVU3091 0.22 +0.6 3,234,709 - DVU3091 0.33 -0.5 3,234,873 + DVU3091 0.45 -0.6 3,234,873 + DVU3091 0.45 -0.3 3,234,874 - DVU3091 0.45 -0.5 3,234,881 - DVU3091 0.46 -0.4 3,234,881 - DVU3091 0.46 -0.1 3,234,881 - DVU3091 0.46 +0.5 3,234,881 - DVU3091 0.46 +0.0 3,234,902 + DVU3091 0.47 +0.1 3,235,008 - DVU3091 0.55 -0.5 3,235,069 + DVU3091 0.60 -0.8 3,235,188 + DVU3091 0.68 -0.8 3,235,227 - DVU3091 0.71 -1.4 3,235,253 + DVU3091 0.73 -1.7 3,235,253 + DVU3091 0.73 -0.2 3,235,261 - DVU3091 0.74 -0.4 3,235,272 + DVU3091 0.75 -0.1 3,235,280 + DVU3091 0.75 +0.4 3,235,288 - DVU3091 0.76 -0.2 3,235,290 + DVU3091 0.76 -0.5 3,235,293 - DVU3091 0.76 +0.6 3,235,472 + DVU3091 0.90 -0.1 3,235,490 + +0.0 3,235,557 + -0.1 3,235,599 + +0.1 3,235,606 + -1.1 3,235,669 - -0.2 3,235,806 - -0.4 3,235,942 - DVU3092 0.18 -0.0 3,235,942 - DVU3092 0.18 -0.3 3,235,956 + DVU3092 0.20 -0.8 3,236,076 + DVU3092 0.38 +0.3 3,236,143 + DVU3092 0.49 +1.1 3,236,151 - DVU3092 0.50 +1.6 3,236,251 + DVU3092 0.65 -0.6 3,236,254 - DVU3092 0.66 -0.7 3,236,256 + DVU3092 0.66 -0.0 3,236,256 + DVU3092 0.66 +0.2 3,236,256 + DVU3092 0.66 -0.7 3,236,260 + DVU3092 0.67 -0.2 3,236,262 + DVU3092 0.67 -0.4 3,236,264 - DVU3092 0.67 -1.0 3,236,264 - DVU3092 0.67 +0.4 3,236,462 - +0.6 3,236,572 - rdl DVU3093 0.24 -0.3
Or see this region's nucleotide sequence