Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3031

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntackA and DVU3031 are separated by 99 nucleotidesDVU3031 and DVU3032 overlap by 4 nucleotidesDVU3032 and DVU3033 are separated by 3 nucleotides DVU3030: ackA - acetate kinase (TIGR), at 3,154,356 to 3,155,564 ackA DVU3031: DVU3031 - conserved hypothetical protein (TIGR), at 3,155,664 to 3,156,755 DVU3031 DVU3032: DVU3032 - conserved hypothetical protein (TIGR), at 3,156,752 to 3,157,381 DVU3032 DVU3033: DVU3033 - iron-sulfur cluster-binding protein (TIGR), at 3,157,385 to 3,159,538 DVU3033 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -2 -1 0 1 2at 3155.582 kb on - strandat 3155.614 kb on + strandat 3155.684 kb on - strandat 3155.709 kb on + strandat 3155.834 kb on + strand, within DVU3031at 3155.952 kb on + strand, within DVU3031at 3155.956 kb on + strand, within DVU3031at 3155.960 kb on - strand, within DVU3031at 3156.019 kb on - strand, within DVU3031at 3156.019 kb on - strand, within DVU3031at 3156.034 kb on + strand, within DVU3031at 3156.061 kb on + strand, within DVU3031at 3156.061 kb on + strand, within DVU3031at 3156.061 kb on + strand, within DVU3031at 3156.145 kb on - strand, within DVU3031at 3156.145 kb on - strand, within DVU3031at 3156.276 kb on - strand, within DVU3031at 3156.528 kb on - strand, within DVU3031at 3156.542 kb on + strand, within DVU3031at 3156.607 kb on - strand, within DVU3031at 3156.648 kb on - strandat 3156.656 kb on + strandat 3156.761 kb on + strandat 3156.792 kb on + strandat 3156.832 kb on - strand, within DVU3032at 3156.863 kb on - strand, within DVU3032at 3157.002 kb on + strand, within DVU3032at 3157.049 kb on + strand, within DVU3032at 3157.143 kb on + strand, within DVU3032at 3157.235 kb on - strand, within DVU3032at 3157.288 kb on - strand, within DVU3032at 3157.342 kb on - strandat 3157.383 kb on - strandat 3157.383 kb on - strandat 3157.383 kb on - strandat 3157.401 kb on - strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.605 kb on - strand, within DVU3033at 3157.605 kb on - strand, within DVU3033at 3157.623 kb on + strand, within DVU3033at 3157.631 kb on - strand, within DVU3033

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,155,582 - -0.1
3,155,614 + -0.4
3,155,684 - -1.0
3,155,709 + +1.9
3,155,834 + DVU3031 0.16 +0.3
3,155,952 + DVU3031 0.26 -1.3
3,155,956 + DVU3031 0.27 -0.1
3,155,960 - DVU3031 0.27 -2.2
3,156,019 - DVU3031 0.33 -1.9
3,156,019 - DVU3031 0.33 +0.5
3,156,034 + DVU3031 0.34 +0.5
3,156,061 + DVU3031 0.36 -0.6
3,156,061 + DVU3031 0.36 -1.2
3,156,061 + DVU3031 0.36 -0.1
3,156,145 - DVU3031 0.44 -0.6
3,156,145 - DVU3031 0.44 -2.2
3,156,276 - DVU3031 0.56 -1.5
3,156,528 - DVU3031 0.79 -1.5
3,156,542 + DVU3031 0.80 -0.8
3,156,607 - DVU3031 0.86 -2.2
3,156,648 - -2.0
3,156,656 + -1.9
3,156,761 + +0.1
3,156,792 + -0.8
3,156,832 - DVU3032 0.13 +0.8
3,156,863 - DVU3032 0.18 +0.7
3,157,002 + DVU3032 0.40 -0.1
3,157,049 + DVU3032 0.47 +0.8
3,157,143 + DVU3032 0.62 +0.1
3,157,235 - DVU3032 0.77 -0.1
3,157,288 - DVU3032 0.85 +0.2
3,157,342 - -1.3
3,157,383 - -0.6
3,157,383 - -0.7
3,157,383 - +0.0
3,157,401 - +1.9
3,157,597 + -0.0
3,157,597 + +0.1
3,157,597 + +0.2
3,157,597 + +1.3
3,157,597 + +0.3
3,157,605 - DVU3033 0.10 -0.8
3,157,605 - DVU3033 0.10 -0.6
3,157,623 + DVU3033 0.11 -1.2
3,157,631 - DVU3033 0.11 +2.1

Or see this region's nucleotide sequence