Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3026

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpor and DVU3026 are separated by 105 nucleotidesDVU3026 and glcD are separated by 174 nucleotides DVU3025: por - pyruvate-ferredoxin oxidoreductase (TIGR), at 3,143,767 to 3,147,414 por DVU3026: DVU3026 - L-lactate permease family protein (TIGR), at 3,147,520 to 3,149,232 DVU3026 DVU3027: glcD - glycolate oxidase, subunit GlcD (TIGR), at 3,149,407 to 3,150,792 glcD Position (kb) 3147 3148 3149 3150Strain fitness (log2 ratio) -2 -1 0 1 2at 3147.460 kb on - strandat 3147.499 kb on + strandat 3147.514 kb on + strandat 3147.621 kb on + strandat 3148.000 kb on + strand, within DVU3026at 3148.272 kb on + strand, within DVU3026at 3148.306 kb on + strand, within DVU3026at 3148.387 kb on - strand, within DVU3026at 3148.485 kb on + strand, within DVU3026at 3148.657 kb on + strand, within DVU3026at 3148.746 kb on + strand, within DVU3026at 3148.770 kb on + strand, within DVU3026at 3148.772 kb on + strand, within DVU3026at 3148.778 kb on - strand, within DVU3026at 3148.833 kb on - strand, within DVU3026at 3148.938 kb on + strand, within DVU3026at 3148.974 kb on - strand, within DVU3026at 3149.136 kb on + strandat 3149.147 kb on + strandat 3149.155 kb on - strandat 3149.179 kb on - strandat 3149.226 kb on + strandat 3149.255 kb on - strandat 3149.533 kb on + strandat 3149.601 kb on + strand, within glcDat 3149.809 kb on + strand, within glcDat 3150.028 kb on + strand, within glcDat 3150.047 kb on - strand, within glcD

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,147,460 - +2.1
3,147,499 + -1.3
3,147,514 + -0.5
3,147,621 + -1.9
3,148,000 + DVU3026 0.28 -1.1
3,148,272 + DVU3026 0.44 -0.8
3,148,306 + DVU3026 0.46 -2.4
3,148,387 - DVU3026 0.51 +1.1
3,148,485 + DVU3026 0.56 +0.1
3,148,657 + DVU3026 0.66 -0.7
3,148,746 + DVU3026 0.72 -1.6
3,148,770 + DVU3026 0.73 -1.0
3,148,772 + DVU3026 0.73 -1.9
3,148,778 - DVU3026 0.73 +1.2
3,148,833 - DVU3026 0.77 -0.6
3,148,938 + DVU3026 0.83 -0.7
3,148,974 - DVU3026 0.85 -1.1
3,149,136 + -0.7
3,149,147 + -0.1
3,149,155 - -1.4
3,149,179 - +0.1
3,149,226 + +0.6
3,149,255 - -1.8
3,149,533 + +0.9
3,149,601 + glcD DVU3027 0.14 -0.2
3,149,809 + glcD DVU3027 0.29 -0.1
3,150,028 + glcD DVU3027 0.45 +1.5
3,150,047 - glcD DVU3027 0.46 -0.0

Or see this region's nucleotide sequence