Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3024

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatoC and DVU3024 are separated by 257 nucleotidesDVU3024 and por overlap by 16 nucleotides DVU3023: atoC - sigma-54 dependent DNA-binding response regulator (TIGR), at 3,141,933 to 3,143,357 atoC DVU3024: DVU3024 - hypothetical protein (TIGR), at 3,143,615 to 3,143,782 DVU3024 DVU3025: por - pyruvate-ferredoxin oxidoreductase (TIGR), at 3,143,767 to 3,147,414 por Position (kb) 3143 3144Strain fitness (log2 ratio) -1 0 1at 3143.183 kb on + strand, within atoCat 3143.351 kb on + strandat 3143.500 kb on + strandat 3143.508 kb on - strandat 3143.664 kb on + strand, within DVU3024at 3143.664 kb on + strand, within DVU3024at 3143.740 kb on + strand, within DVU3024

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,143,183 + atoC DVU3023 0.88 -0.8
3,143,351 + -0.1
3,143,500 + +0.6
3,143,508 - -1.1
3,143,664 + DVU3024 0.29 -1.0
3,143,664 + DVU3024 0.29 +0.2
3,143,740 + DVU3024 0.74 -0.7

Or see this region's nucleotide sequence