Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3022

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3021 and DVU3022 are separated by 61 nucleotidesDVU3022 and atoC overlap by 4 nucleotides DVU3021: DVU3021 - HDIG domain protein (TIGR), at 3,137,085 to 3,138,455 DVU3021 DVU3022: DVU3022 - sensory box histidine kinase/response regulator (TIGR), at 3,138,517 to 3,141,936 DVU3022 DVU3023: atoC - sigma-54 dependent DNA-binding response regulator (TIGR), at 3,141,933 to 3,143,357 atoC Position (kb) 3138 3139 3140 3141 3142Strain fitness (log2 ratio) -1 0 1at 3137.527 kb on - strand, within DVU3021at 3137.550 kb on - strand, within DVU3021at 3137.593 kb on + strand, within DVU3021at 3137.632 kb on - strand, within DVU3021at 3137.646 kb on + strand, within DVU3021at 3137.654 kb on - strand, within DVU3021at 3137.683 kb on + strand, within DVU3021at 3137.720 kb on + strand, within DVU3021at 3137.728 kb on - strand, within DVU3021at 3137.768 kb on - strand, within DVU3021at 3137.846 kb on + strand, within DVU3021at 3137.862 kb on - strand, within DVU3021at 3137.888 kb on - strand, within DVU3021at 3138.103 kb on - strand, within DVU3021at 3138.119 kb on - strand, within DVU3021at 3138.119 kb on - strand, within DVU3021at 3138.156 kb on - strand, within DVU3021at 3138.161 kb on + strand, within DVU3021at 3138.167 kb on + strand, within DVU3021at 3138.169 kb on - strand, within DVU3021at 3138.175 kb on - strand, within DVU3021at 3138.175 kb on - strand, within DVU3021at 3138.241 kb on - strand, within DVU3021at 3138.272 kb on + strand, within DVU3021at 3138.280 kb on - strand, within DVU3021at 3138.402 kb on + strandat 3138.461 kb on + strandat 3140.668 kb on - strand, within DVU3022at 3141.829 kb on + strandat 3141.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,137,527 - DVU3021 0.32 +0.0
3,137,550 - DVU3021 0.34 -0.6
3,137,593 + DVU3021 0.37 -0.4
3,137,632 - DVU3021 0.40 +1.4
3,137,646 + DVU3021 0.41 -0.2
3,137,654 - DVU3021 0.42 +0.7
3,137,683 + DVU3021 0.44 +0.1
3,137,720 + DVU3021 0.46 +1.7
3,137,728 - DVU3021 0.47 -0.0
3,137,768 - DVU3021 0.50 +0.5
3,137,846 + DVU3021 0.56 +0.2
3,137,862 - DVU3021 0.57 +0.0
3,137,888 - DVU3021 0.59 +0.4
3,138,103 - DVU3021 0.74 -0.5
3,138,119 - DVU3021 0.75 +0.3
3,138,119 - DVU3021 0.75 -0.4
3,138,156 - DVU3021 0.78 +0.1
3,138,161 + DVU3021 0.78 +0.3
3,138,167 + DVU3021 0.79 +0.4
3,138,169 - DVU3021 0.79 -1.3
3,138,175 - DVU3021 0.80 -0.4
3,138,175 - DVU3021 0.80 +0.0
3,138,241 - DVU3021 0.84 -0.1
3,138,272 + DVU3021 0.87 -0.3
3,138,280 - DVU3021 0.87 +0.7
3,138,402 + -0.3
3,138,461 + -0.3
3,140,668 - DVU3022 0.63 -0.8
3,141,829 + -0.9
3,141,918 - -0.4

Or see this region's nucleotide sequence