Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2985

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2984 and leuB are separated by 29 nucleotidesleuB and pspC are separated by 608 nucleotides DVU2984: DVU2984 - conserved hypothetical protein (TIGR), at 3,091,155 to 3,092,162 DVU2984 DVU2985: leuB - 3-isopropylmalate dehydrogenase (TIGR), at 3,092,192 to 3,093,265 leuB DVU2986: pspC - phage shock protein C (TIGR), at 3,093,874 to 3,094,296 pspC Position (kb) 3092 3093 3094Strain fitness (log2 ratio) -2 -1 0 1at 3091.269 kb on - strand, within DVU2984at 3091.291 kb on - strand, within DVU2984at 3091.355 kb on + strand, within DVU2984at 3091.402 kb on - strand, within DVU2984at 3091.464 kb on + strand, within DVU2984at 3091.472 kb on - strand, within DVU2984at 3091.504 kb on + strand, within DVU2984at 3091.569 kb on + strand, within DVU2984at 3091.709 kb on - strand, within DVU2984at 3091.716 kb on - strand, within DVU2984at 3091.828 kb on - strand, within DVU2984at 3091.870 kb on + strand, within DVU2984at 3091.878 kb on + strand, within DVU2984at 3091.918 kb on + strand, within DVU2984at 3091.923 kb on + strand, within DVU2984at 3091.931 kb on - strand, within DVU2984at 3091.968 kb on + strand, within DVU2984at 3092.003 kb on + strand, within DVU2984at 3092.027 kb on + strand, within DVU2984at 3092.034 kb on + strand, within DVU2984at 3092.203 kb on + strandat 3092.261 kb on - strandat 3092.323 kb on - strand, within leuBat 3092.396 kb on + strand, within leuBat 3092.396 kb on + strand, within leuBat 3092.402 kb on - strand, within leuBat 3092.440 kb on - strand, within leuBat 3092.484 kb on + strand, within leuBat 3092.519 kb on - strand, within leuBat 3092.558 kb on + strand, within leuBat 3092.566 kb on - strand, within leuBat 3092.680 kb on - strand, within leuBat 3092.725 kb on - strand, within leuBat 3092.727 kb on + strand, within leuBat 3092.749 kb on + strand, within leuBat 3092.749 kb on + strand, within leuBat 3092.897 kb on - strand, within leuBat 3092.905 kb on - strand, within leuBat 3092.931 kb on - strand, within leuBat 3092.990 kb on + strand, within leuBat 3093.019 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.067 kb on + strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.075 kb on - strand, within leuBat 3093.117 kb on + strand, within leuBat 3093.209 kb on + strandat 3093.218 kb on + strandat 3093.220 kb on + strandat 3093.226 kb on - strandat 3093.317 kb on + strandat 3093.375 kb on + strandat 3093.419 kb on - strandat 3093.439 kb on + strandat 3093.447 kb on - strandat 3093.449 kb on - strandat 3093.690 kb on - strandat 3093.979 kb on - strand, within pspCat 3093.986 kb on - strand, within pspCat 3093.987 kb on + strand, within pspCat 3094.056 kb on - strand, within pspCat 3094.064 kb on + strand, within pspCat 3094.141 kb on - strand, within pspCat 3094.199 kb on + strand, within pspCat 3094.207 kb on - strand, within pspCat 3094.207 kb on - strand, within pspCat 3094.207 kb on - strand, within pspCat 3094.207 kb on - strand, within pspCat 3094.233 kb on - strand, within pspC

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,091,269 - DVU2984 0.11 -0.7
3,091,291 - DVU2984 0.13 -0.8
3,091,355 + DVU2984 0.20 -2.0
3,091,402 - DVU2984 0.25 -0.5
3,091,464 + DVU2984 0.31 -0.7
3,091,472 - DVU2984 0.31 -0.3
3,091,504 + DVU2984 0.35 +0.1
3,091,569 + DVU2984 0.41 +0.3
3,091,709 - DVU2984 0.55 -0.1
3,091,716 - DVU2984 0.56 +0.7
3,091,828 - DVU2984 0.67 +0.1
3,091,870 + DVU2984 0.71 -1.8
3,091,878 + DVU2984 0.72 -1.9
3,091,918 + DVU2984 0.76 -0.0
3,091,923 + DVU2984 0.76 -0.2
3,091,931 - DVU2984 0.77 +0.4
3,091,968 + DVU2984 0.81 -0.6
3,092,003 + DVU2984 0.84 -0.7
3,092,027 + DVU2984 0.87 +0.7
3,092,034 + DVU2984 0.87 -0.4
3,092,203 + -2.1
3,092,261 - -0.8
3,092,323 - leuB DVU2985 0.12 -0.4
3,092,396 + leuB DVU2985 0.19 -0.7
3,092,396 + leuB DVU2985 0.19 -1.2
3,092,402 - leuB DVU2985 0.20 -1.6
3,092,440 - leuB DVU2985 0.23 -1.1
3,092,484 + leuB DVU2985 0.27 -1.2
3,092,519 - leuB DVU2985 0.30 -0.7
3,092,558 + leuB DVU2985 0.34 -0.8
3,092,566 - leuB DVU2985 0.35 -1.3
3,092,680 - leuB DVU2985 0.45 +0.6
3,092,725 - leuB DVU2985 0.50 -0.2
3,092,727 + leuB DVU2985 0.50 -1.7
3,092,749 + leuB DVU2985 0.52 -1.0
3,092,749 + leuB DVU2985 0.52 -1.7
3,092,897 - leuB DVU2985 0.66 -0.9
3,092,905 - leuB DVU2985 0.66 -0.1
3,092,931 - leuB DVU2985 0.69 -1.8
3,092,990 + leuB DVU2985 0.74 -1.5
3,093,019 + leuB DVU2985 0.77 -1.1
3,093,061 + leuB DVU2985 0.81 -1.9
3,093,061 + leuB DVU2985 0.81 -0.9
3,093,061 + leuB DVU2985 0.81 -0.6
3,093,061 + leuB DVU2985 0.81 -1.5
3,093,061 + leuB DVU2985 0.81 -0.9
3,093,061 + leuB DVU2985 0.81 -1.1
3,093,067 + leuB DVU2985 0.81 -0.1
3,093,069 - leuB DVU2985 0.82 -0.6
3,093,069 - leuB DVU2985 0.82 -1.1
3,093,069 - leuB DVU2985 0.82 -0.6
3,093,069 - leuB DVU2985 0.82 -1.6
3,093,069 - leuB DVU2985 0.82 +0.3
3,093,075 - leuB DVU2985 0.82 -1.0
3,093,117 + leuB DVU2985 0.86 -1.2
3,093,209 + +0.4
3,093,218 + -0.6
3,093,220 + -0.7
3,093,226 - -0.7
3,093,317 + -1.7
3,093,375 + -0.5
3,093,419 - -1.4
3,093,439 + -0.1
3,093,447 - +0.3
3,093,449 - -0.0
3,093,690 - -0.2
3,093,979 - pspC DVU2986 0.25 -0.3
3,093,986 - pspC DVU2986 0.26 +0.1
3,093,987 + pspC DVU2986 0.27 -0.2
3,094,056 - pspC DVU2986 0.43 -0.4
3,094,064 + pspC DVU2986 0.45 -0.1
3,094,141 - pspC DVU2986 0.63 -0.2
3,094,199 + pspC DVU2986 0.77 +0.3
3,094,207 - pspC DVU2986 0.79 -0.9
3,094,207 - pspC DVU2986 0.79 -0.6
3,094,207 - pspC DVU2986 0.79 -0.1
3,094,207 - pspC DVU2986 0.79 +0.0
3,094,233 - pspC DVU2986 0.85 +0.2

Or see this region's nucleotide sequence