Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2983

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuC and leuD are separated by 17 nucleotidesleuD and DVU2984 are separated by 2 nucleotides DVU2982: leuC - 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data), at 3,089,372 to 3,090,631 leuC DVU2983: leuD - 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) (from data), at 3,090,649 to 3,091,152 leuD DVU2984: DVU2984 - conserved hypothetical protein (TIGR), at 3,091,155 to 3,092,162 DVU2984 Position (kb) 3090 3091 3092Strain fitness (log2 ratio) -2 -1 0 1at 3089.652 kb on + strand, within leuCat 3089.653 kb on - strand, within leuCat 3089.694 kb on - strand, within leuCat 3089.763 kb on + strand, within leuCat 3089.783 kb on + strand, within leuCat 3089.783 kb on + strand, within leuCat 3089.818 kb on - strand, within leuCat 3089.833 kb on + strand, within leuCat 3089.841 kb on - strand, within leuCat 3089.925 kb on - strand, within leuCat 3089.942 kb on + strand, within leuCat 3089.942 kb on + strand, within leuCat 3089.947 kb on + strand, within leuCat 3089.950 kb on - strand, within leuCat 3090.076 kb on + strand, within leuCat 3090.115 kb on + strand, within leuCat 3090.137 kb on + strand, within leuCat 3090.145 kb on - strand, within leuCat 3090.164 kb on - strand, within leuCat 3090.178 kb on - strand, within leuCat 3090.348 kb on + strand, within leuCat 3090.412 kb on - strand, within leuCat 3090.565 kb on + strandat 3090.616 kb on + strandat 3090.618 kb on + strandat 3090.624 kb on - strandat 3090.766 kb on - strand, within leuDat 3090.777 kb on + strand, within leuDat 3090.787 kb on - strand, within leuDat 3090.939 kb on - strand, within leuDat 3091.059 kb on - strand, within leuDat 3091.066 kb on + strand, within leuDat 3091.074 kb on - strand, within leuDat 3091.114 kb on + strandat 3091.269 kb on - strand, within DVU2984at 3091.291 kb on - strand, within DVU2984at 3091.355 kb on + strand, within DVU2984at 3091.402 kb on - strand, within DVU2984at 3091.464 kb on + strand, within DVU2984at 3091.472 kb on - strand, within DVU2984at 3091.504 kb on + strand, within DVU2984at 3091.569 kb on + strand, within DVU2984at 3091.709 kb on - strand, within DVU2984at 3091.716 kb on - strand, within DVU2984at 3091.828 kb on - strand, within DVU2984at 3091.870 kb on + strand, within DVU2984at 3091.878 kb on + strand, within DVU2984at 3091.918 kb on + strand, within DVU2984at 3091.923 kb on + strand, within DVU2984at 3091.931 kb on - strand, within DVU2984at 3091.968 kb on + strand, within DVU2984at 3092.003 kb on + strand, within DVU2984at 3092.027 kb on + strand, within DVU2984at 3092.034 kb on + strand, within DVU2984

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,089,652 + leuC DVU2982 0.22 -0.4
3,089,653 - leuC DVU2982 0.22 -1.2
3,089,694 - leuC DVU2982 0.26 -0.8
3,089,763 + leuC DVU2982 0.31 -1.6
3,089,783 + leuC DVU2982 0.33 -1.5
3,089,783 + leuC DVU2982 0.33 -1.3
3,089,818 - leuC DVU2982 0.35 +0.2
3,089,833 + leuC DVU2982 0.37 -1.4
3,089,841 - leuC DVU2982 0.37 -0.8
3,089,925 - leuC DVU2982 0.44 -0.8
3,089,942 + leuC DVU2982 0.45 -0.6
3,089,942 + leuC DVU2982 0.45 -2.0
3,089,947 + leuC DVU2982 0.46 -1.3
3,089,950 - leuC DVU2982 0.46 -0.7
3,090,076 + leuC DVU2982 0.56 -0.6
3,090,115 + leuC DVU2982 0.59 -0.9
3,090,137 + leuC DVU2982 0.61 -2.0
3,090,145 - leuC DVU2982 0.61 -0.9
3,090,164 - leuC DVU2982 0.63 -1.3
3,090,178 - leuC DVU2982 0.64 -1.0
3,090,348 + leuC DVU2982 0.77 -2.0
3,090,412 - leuC DVU2982 0.83 -1.7
3,090,565 + -0.6
3,090,616 + -1.3
3,090,618 + -0.9
3,090,624 - -2.1
3,090,766 - leuD DVU2983 0.23 -1.6
3,090,777 + leuD DVU2983 0.25 -1.1
3,090,787 - leuD DVU2983 0.27 -0.9
3,090,939 - leuD DVU2983 0.58 -1.5
3,091,059 - leuD DVU2983 0.81 -2.0
3,091,066 + leuD DVU2983 0.83 -1.6
3,091,074 - leuD DVU2983 0.84 -0.3
3,091,114 + +0.1
3,091,269 - DVU2984 0.11 -0.7
3,091,291 - DVU2984 0.13 -0.8
3,091,355 + DVU2984 0.20 -2.0
3,091,402 - DVU2984 0.25 -0.5
3,091,464 + DVU2984 0.31 -0.7
3,091,472 - DVU2984 0.31 -0.3
3,091,504 + DVU2984 0.35 +0.1
3,091,569 + DVU2984 0.41 +0.3
3,091,709 - DVU2984 0.55 -0.1
3,091,716 - DVU2984 0.56 +0.7
3,091,828 - DVU2984 0.67 +0.1
3,091,870 + DVU2984 0.71 -1.8
3,091,878 + DVU2984 0.72 -1.9
3,091,918 + DVU2984 0.76 -0.0
3,091,923 + DVU2984 0.76 -0.2
3,091,931 - DVU2984 0.77 +0.4
3,091,968 + DVU2984 0.81 -0.6
3,092,003 + DVU2984 0.84 -0.7
3,092,027 + DVU2984 0.87 +0.7
3,092,034 + DVU2984 0.87 -0.4

Or see this region's nucleotide sequence