Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2915

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprfA and DVU2915 are separated by 310 nucleotidesDVU2915 and hemK are separated by 224 nucleotides DVU2914: prfA - peptide chain release factor 1 (TIGR), at 3,014,361 to 3,015,434 prfA DVU2915: DVU2915 - hypothetical protein (TIGR), at 3,015,745 to 3,015,909 DVU2915 DVU2916: hemK - hemK protein (TIGR), at 3,016,134 to 3,017,021 hemK Position (kb) 3015 3016Strain fitness (log2 ratio) -1 0 1at 3015.422 kb on - strandat 3015.587 kb on + strandat 3015.700 kb on - strandat 3015.708 kb on - strandat 3015.727 kb on + strandat 3015.735 kb on + strandat 3015.737 kb on - strandat 3015.821 kb on + strand, within DVU2915at 3015.878 kb on - strand, within DVU2915at 3015.925 kb on + strandat 3015.933 kb on - strandat 3016.019 kb on + strandat 3016.027 kb on - strandat 3016.046 kb on + strandat 3016.046 kb on + strandat 3016.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,015,422 - +0.8
3,015,587 + +0.4
3,015,700 - +0.4
3,015,708 - -0.4
3,015,727 + +0.1
3,015,735 + +0.1
3,015,737 - -0.8
3,015,821 + DVU2915 0.46 -1.3
3,015,878 - DVU2915 0.81 -0.9
3,015,925 + -0.0
3,015,933 - -0.1
3,016,019 + -0.2
3,016,027 - +1.1
3,016,046 + +0.4
3,016,046 + +0.7
3,016,081 - -0.2

Or see this region's nucleotide sequence