Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2819

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntacrA and DVU2818 are separated by 74 nucleotidesDVU2818 and DVU2819 are separated by 163 nucleotidesDVU2819 and DVU2820 are separated by 187 nucleotides DVU2817: acrA - multidrug resistance protein (TIGR), at 2,923,238 to 2,924,491 acrA DVU2818: DVU2818 - hypothetical protein (TIGR), at 2,924,566 to 2,924,784 DVU2818 DVU2819: DVU2819 - transcriptional regulator, TetR family (TIGR), at 2,924,948 to 2,925,556 DVU2819 DVU2820: DVU2820 - amidohydrolase family protein (TIGR), at 2,925,744 to 2,926,580 DVU2820 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -2 -1 0 1 2at 2923.966 kb on - strand, within acrAat 2923.991 kb on + strand, within acrAat 2924.020 kb on - strand, within acrAat 2924.034 kb on + strand, within acrAat 2924.034 kb on + strand, within acrAat 2924.034 kb on + strand, within acrAat 2924.042 kb on - strand, within acrAat 2924.042 kb on - strand, within acrAat 2924.195 kb on + strand, within acrAat 2924.219 kb on - strand, within acrAat 2924.337 kb on + strand, within acrAat 2924.345 kb on - strand, within acrAat 2924.494 kb on + strandat 2924.497 kb on - strandat 2924.502 kb on - strandat 2924.528 kb on + strandat 2924.603 kb on - strand, within DVU2818at 2924.603 kb on - strand, within DVU2818at 2924.649 kb on + strand, within DVU2818at 2924.718 kb on + strand, within DVU2818at 2924.894 kb on - strandat 2924.903 kb on - strandat 2924.936 kb on + strandat 2924.938 kb on + strandat 2924.951 kb on + strandat 2925.018 kb on - strand, within DVU2819at 2925.083 kb on + strand, within DVU2819at 2925.083 kb on + strand, within DVU2819at 2925.208 kb on - strand, within DVU2819at 2925.361 kb on + strand, within DVU2819at 2925.436 kb on + strand, within DVU2819at 2925.436 kb on + strand, within DVU2819at 2925.451 kb on + strand, within DVU2819at 2925.565 kb on + strandat 2925.573 kb on - strandat 2925.577 kb on - strandat 2925.607 kb on + strandat 2925.607 kb on + strandat 2925.607 kb on + strandat 2925.610 kb on - strandat 2925.610 kb on - strandat 2925.620 kb on - strandat 2925.641 kb on - strandat 2925.648 kb on + strandat 2925.764 kb on + strandat 2925.830 kb on + strand, within DVU2820at 2925.838 kb on - strand, within DVU2820at 2925.838 kb on - strand, within DVU2820at 2925.843 kb on + strand, within DVU2820at 2925.932 kb on - strand, within DVU2820at 2925.966 kb on - strand, within DVU2820at 2925.984 kb on + strand, within DVU2820at 2926.023 kb on + strand, within DVU2820at 2926.068 kb on - strand, within DVU2820at 2926.084 kb on + strand, within DVU2820at 2926.087 kb on - strand, within DVU2820at 2926.092 kb on - strand, within DVU2820at 2926.107 kb on - strand, within DVU2820at 2926.145 kb on + strand, within DVU2820at 2926.153 kb on - strand, within DVU2820at 2926.173 kb on - strand, within DVU2820at 2926.182 kb on - strand, within DVU2820at 2926.195 kb on + strand, within DVU2820at 2926.273 kb on - strand, within DVU2820at 2926.278 kb on + strand, within DVU2820at 2926.295 kb on + strand, within DVU2820at 2926.308 kb on + strand, within DVU2820at 2926.384 kb on + strand, within DVU2820at 2926.404 kb on - strand, within DVU2820

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,923,966 - acrA DVU2817 0.58 -0.2
2,923,991 + acrA DVU2817 0.60 -0.2
2,924,020 - acrA DVU2817 0.62 -2.4
2,924,034 + acrA DVU2817 0.63 +1.0
2,924,034 + acrA DVU2817 0.63 -0.1
2,924,034 + acrA DVU2817 0.63 -0.1
2,924,042 - acrA DVU2817 0.64 -0.0
2,924,042 - acrA DVU2817 0.64 +0.2
2,924,195 + acrA DVU2817 0.76 -0.2
2,924,219 - acrA DVU2817 0.78 +0.5
2,924,337 + acrA DVU2817 0.88 -0.1
2,924,345 - acrA DVU2817 0.88 +0.4
2,924,494 + -0.6
2,924,497 - +0.8
2,924,502 - -0.2
2,924,528 + -0.1
2,924,603 - DVU2818 0.17 -0.4
2,924,603 - DVU2818 0.17 -0.7
2,924,649 + DVU2818 0.38 +0.2
2,924,718 + DVU2818 0.69 -0.1
2,924,894 - -0.1
2,924,903 - +0.1
2,924,936 + +0.5
2,924,938 + -0.2
2,924,951 + -0.4
2,925,018 - DVU2819 0.11 -1.4
2,925,083 + DVU2819 0.22 -0.8
2,925,083 + DVU2819 0.22 -0.7
2,925,208 - DVU2819 0.43 -2.2
2,925,361 + DVU2819 0.68 -0.5
2,925,436 + DVU2819 0.80 -1.4
2,925,436 + DVU2819 0.80 -0.5
2,925,451 + DVU2819 0.83 -1.6
2,925,565 + -1.9
2,925,573 - -0.5
2,925,577 - -0.2
2,925,607 + -0.5
2,925,607 + -1.1
2,925,607 + +0.4
2,925,610 - -0.4
2,925,610 - -1.1
2,925,620 - -0.1
2,925,641 - -0.1
2,925,648 + -0.5
2,925,764 + +0.2
2,925,830 + DVU2820 0.10 -0.5
2,925,838 - DVU2820 0.11 +0.8
2,925,838 - DVU2820 0.11 +1.9
2,925,843 + DVU2820 0.12 -0.1
2,925,932 - DVU2820 0.22 -0.6
2,925,966 - DVU2820 0.27 -1.1
2,925,984 + DVU2820 0.29 +0.1
2,926,023 + DVU2820 0.33 -0.4
2,926,068 - DVU2820 0.39 -0.1
2,926,084 + DVU2820 0.41 -2.6
2,926,087 - DVU2820 0.41 -0.9
2,926,092 - DVU2820 0.42 +1.2
2,926,107 - DVU2820 0.43 -0.2
2,926,145 + DVU2820 0.48 +0.1
2,926,153 - DVU2820 0.49 -0.1
2,926,173 - DVU2820 0.51 -2.0
2,926,182 - DVU2820 0.52 +0.9
2,926,195 + DVU2820 0.54 +0.1
2,926,273 - DVU2820 0.63 +0.2
2,926,278 + DVU2820 0.64 -0.1
2,926,295 + DVU2820 0.66 -0.4
2,926,308 + DVU2820 0.67 +0.7
2,926,384 + DVU2820 0.76 -0.3
2,926,404 - DVU2820 0.79 -0.3

Or see this region's nucleotide sequence