Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2692

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2690 and DORF43274 overlap by 8 nucleotidesDORF43274 and DVU2691 overlap by 49 nucleotidesDVU2691 and DVU2692 are separated by 9 nucleotidesDVU2692 and DVU2693 are separated by 85 nucleotidesDVU2693 and DVU2694 are separated by 81 nucleotidesDVU2694 and DVU2695 are separated by 8 nucleotides DVU2690: DVU2690 - hypothetical protein (TIGR), at 2,804,317 to 2,804,904 DVU2690 DORF43274: DORF43274 - no description, at 2,804,897 to 2,805,226 DORF43274 DVU2691: DVU2691 - hypothetical protein (TIGR), at 2,805,178 to 2,805,711 DVU2691 DVU2692: DVU2692 - conserved domain protein (TIGR), at 2,805,721 to 2,805,957 DVU2692 DVU2693: DVU2693 - hypothetical protein (TIGR), at 2,806,043 to 2,806,282 DVU2693 DVU2694: DVU2694 - hypothetical protein (TIGR), at 2,806,364 to 2,806,798 DVU2694 DVU2695: DVU2695 - conserved hypothetical protein (TIGR), at 2,806,807 to 2,807,223 DVU2695 Position (kb) 2805 2806Strain fitness (log2 ratio) -1 0 1at 2804.759 kb on + strand, within DVU2690at 2804.765 kb on - strand, within DVU2690at 2804.821 kb on - strand, within DVU2690at 2804.825 kb on + strand, within DVU2690at 2804.879 kb on - strandat 2804.887 kb on - strandat 2804.893 kb on + strandat 2804.893 kb on + strandat 2804.893 kb on + strandat 2804.907 kb on + strandat 2805.015 kb on - strand, within DORF43274at 2805.015 kb on - strand, within DORF43274at 2805.061 kb on - strand, within DORF43274at 2805.114 kb on - strand, within DORF43274at 2805.123 kb on + strand, within DORF43274at 2805.191 kb on + strandat 2805.259 kb on + strand, within DVU2691at 2805.259 kb on + strand, within DVU2691at 2805.478 kb on + strand, within DVU2691at 2805.486 kb on - strand, within DVU2691at 2805.533 kb on - strand, within DVU2691at 2805.552 kb on - strand, within DVU2691at 2805.552 kb on - strand, within DVU2691at 2805.636 kb on + strand, within DVU2691at 2805.645 kb on - strand, within DVU2691at 2805.687 kb on - strandat 2805.687 kb on - strandat 2805.687 kb on - strandat 2805.743 kb on - strandat 2805.865 kb on + strand, within DVU2692at 2805.946 kb on - strandat 2806.015 kb on + strandat 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.277 kb on - strandat 2806.364 kb on - strandat 2806.365 kb on + strandat 2806.373 kb on - strandat 2806.486 kb on - strand, within DVU2694at 2806.542 kb on - strand, within DVU2694at 2806.574 kb on + strand, within DVU2694at 2806.608 kb on + strand, within DVU2694at 2806.608 kb on + strand, within DVU2694at 2806.616 kb on - strand, within DVU2694at 2806.670 kb on + strand, within DVU2694at 2806.736 kb on - strand, within DVU2694at 2806.742 kb on - strand, within DVU2694at 2806.747 kb on - strand, within DVU2694at 2806.755 kb on - strandat 2806.759 kb on + strandat 2806.782 kb on + strandat 2806.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,804,759 + DVU2690 0.75 +0.4
2,804,765 - DVU2690 0.76 -0.2
2,804,821 - DVU2690 0.86 -0.2
2,804,825 + DVU2690 0.86 +0.0
2,804,879 - -0.5
2,804,887 - -0.7
2,804,893 + -0.2
2,804,893 + +0.1
2,804,893 + +0.4
2,804,907 + +1.2
2,805,015 - DORF43274 0.36 +0.8
2,805,015 - DORF43274 0.36 -0.6
2,805,061 - DORF43274 0.50 -0.6
2,805,114 - DORF43274 0.66 -0.5
2,805,123 + DORF43274 0.68 -0.2
2,805,191 + -0.4
2,805,259 + DVU2691 0.15 -0.4
2,805,259 + DVU2691 0.15 -0.4
2,805,478 + DVU2691 0.56 +0.6
2,805,486 - DVU2691 0.58 -0.0
2,805,533 - DVU2691 0.66 -0.2
2,805,552 - DVU2691 0.70 -0.1
2,805,552 - DVU2691 0.70 -0.5
2,805,636 + DVU2691 0.86 -0.3
2,805,645 - DVU2691 0.87 -0.2
2,805,687 - +0.3
2,805,687 - -0.8
2,805,687 - -1.5
2,805,743 - -0.4
2,805,865 + DVU2692 0.61 -1.0
2,805,946 - +0.6
2,806,015 + -0.7
2,806,155 + DVU2693 0.47 -0.4
2,806,155 + DVU2693 0.47 -0.8
2,806,155 + DVU2693 0.47 -0.2
2,806,155 + DVU2693 0.47 -0.4
2,806,155 + DVU2693 0.47 -0.3
2,806,155 + DVU2693 0.47 -0.6
2,806,163 - DVU2693 0.50 -0.9
2,806,163 - DVU2693 0.50 +0.4
2,806,163 - DVU2693 0.50 +0.6
2,806,163 - DVU2693 0.50 -0.3
2,806,277 - +0.9
2,806,364 - -0.2
2,806,365 + -0.5
2,806,373 - +0.5
2,806,486 - DVU2694 0.28 -0.1
2,806,542 - DVU2694 0.41 -0.0
2,806,574 + DVU2694 0.48 -0.3
2,806,608 + DVU2694 0.56 -0.1
2,806,608 + DVU2694 0.56 -0.6
2,806,616 - DVU2694 0.58 -0.7
2,806,670 + DVU2694 0.70 -0.4
2,806,736 - DVU2694 0.86 +0.2
2,806,742 - DVU2694 0.87 +0.8
2,806,747 - DVU2694 0.88 -0.1
2,806,755 - -0.2
2,806,759 + -0.1
2,806,782 + -0.2
2,806,790 - +0.5

Or see this region's nucleotide sequence