Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dacA and DVU2657 are separated by 357 nucleotides DVU2657 and DVU2658 are separated by 262 nucleotides DVU2658 and DVU2659 overlap by 4 nucleotides
DVU2655: dacA - D-alanyl-D-alanine carboxypeptidase family protein (TIGR), at 2,768,362 to 2,769,687
dacA
DVU2657: DVU2657 - 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR), at 2,770,045 to 2,770,407
DVU2657
DVU2658: DVU2658 - conserved hypothetical protein (TIGR), at 2,770,670 to 2,771,320
DVU2658
DVU2659: DVU2659 - exsB protein (TIGR), at 2,771,317 to 2,772,045
DVU2659
Position (kb)
2770
2771 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2769.055 kb on - strand, within dacA at 2769.092 kb on - strand, within dacA at 2769.113 kb on - strand, within dacA at 2769.113 kb on - strand, within dacA at 2769.340 kb on + strand, within dacA at 2769.355 kb on + strand, within dacA at 2769.380 kb on + strand, within dacA at 2769.388 kb on - strand, within dacA at 2769.411 kb on + strand, within dacA at 2769.464 kb on - strand, within dacA at 2769.507 kb on + strand, within dacA at 2769.569 kb on - strand at 2769.647 kb on - strand at 2769.655 kb on - strand at 2769.655 kb on - strand at 2769.747 kb on + strand at 2769.783 kb on - strand at 2769.809 kb on - strand at 2769.874 kb on - strand at 2769.899 kb on - strand at 2769.899 kb on - strand at 2769.931 kb on - strand at 2770.071 kb on + strand at 2770.124 kb on + strand, within DVU2657 at 2770.171 kb on - strand, within DVU2657 at 2770.190 kb on - strand, within DVU2657 at 2770.420 kb on - strand at 2770.495 kb on - strand at 2770.525 kb on + strand at 2770.531 kb on + strand at 2770.608 kb on - strand at 2770.628 kb on - strand at 2770.642 kb on - strand at 2770.731 kb on - strand at 2770.863 kb on + strand, within DVU2658 at 2770.871 kb on - strand, within DVU2658 at 2770.983 kb on - strand, within DVU2658 at 2770.983 kb on - strand, within DVU2658 at 2771.008 kb on + strand, within DVU2658 at 2771.198 kb on + strand, within DVU2658
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 2,769,055 - dacA DVU2655 0.52 -0.4 2,769,092 - dacA DVU2655 0.55 -0.9 2,769,113 - dacA DVU2655 0.57 -1.4 2,769,113 - dacA DVU2655 0.57 -0.6 2,769,340 + dacA DVU2655 0.74 +0.1 2,769,355 + dacA DVU2655 0.75 -0.0 2,769,380 + dacA DVU2655 0.77 -1.0 2,769,388 - dacA DVU2655 0.77 -0.3 2,769,411 + dacA DVU2655 0.79 -1.6 2,769,464 - dacA DVU2655 0.83 +0.2 2,769,507 + dacA DVU2655 0.86 -0.1 2,769,569 - +0.1 2,769,647 - +0.1 2,769,655 - -1.1 2,769,655 - -0.1 2,769,747 + -0.4 2,769,783 - -0.1 2,769,809 - -1.5 2,769,874 - +0.0 2,769,899 - +0.5 2,769,899 - -0.3 2,769,931 - +0.3 2,770,071 + +2.1 2,770,124 + DVU2657 0.22 -2.6 2,770,171 - DVU2657 0.35 +0.2 2,770,190 - DVU2657 0.40 -0.8 2,770,420 - -0.3 2,770,495 - +0.1 2,770,525 + -1.2 2,770,531 + -0.2 2,770,608 - +1.9 2,770,628 - -0.2 2,770,642 - -0.2 2,770,731 - -0.6 2,770,863 + DVU2658 0.30 -0.9 2,770,871 - DVU2658 0.31 -0.4 2,770,983 - DVU2658 0.48 +0.2 2,770,983 - DVU2658 0.48 -0.7 2,771,008 + DVU2658 0.52 +0.3 2,771,198 + DVU2658 0.81 -0.6
Or see this region's nucleotide sequence