Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2528

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthynA-2 and DVU2527 are separated by 142 nucleotidesDVU2527 and DVU2528 are separated by 74 nucleotidesDVU2528 and pgk are separated by 80 nucleotides DVU2526: hynA-2 - periplasmic [NiFe] hydrogenase, large subunit, isozyme 2 (TIGR), at 2,637,049 to 2,638,698 hynA-2 DVU2527: DVU2527 - transcriptional regulator, putative (TIGR), at 2,638,841 to 2,639,239 DVU2527 DVU2528: DVU2528 - hypothetical protein (TIGR), at 2,639,314 to 2,639,511 DVU2528 DVU2529: pgk - phosphoglycerate kinase (TIGR), at 2,639,592 to 2,640,773 pgk Position (kb) 2639 2640Strain fitness (log2 ratio) -2 -1 0 1at 2638.353 kb on + strand, within hynA-2at 2638.353 kb on + strand, within hynA-2at 2638.353 kb on + strand, within hynA-2at 2638.361 kb on - strand, within hynA-2at 2638.361 kb on - strand, within hynA-2at 2638.419 kb on + strand, within hynA-2at 2638.444 kb on + strand, within hynA-2at 2638.574 kb on + strandat 2638.574 kb on + strandat 2638.574 kb on + strandat 2638.574 kb on + strandat 2638.579 kb on + strandat 2638.688 kb on - strandat 2638.714 kb on + strandat 2639.345 kb on + strand, within DVU2528at 2639.467 kb on - strand, within DVU2528at 2639.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,638,353 + hynA-2 DVU2526 0.79 -0.7
2,638,353 + hynA-2 DVU2526 0.79 -0.1
2,638,353 + hynA-2 DVU2526 0.79 -2.1
2,638,361 - hynA-2 DVU2526 0.80 -0.4
2,638,361 - hynA-2 DVU2526 0.80 -0.1
2,638,419 + hynA-2 DVU2526 0.83 +0.1
2,638,444 + hynA-2 DVU2526 0.85 +0.1
2,638,574 + -0.5
2,638,574 + -1.0
2,638,574 + +0.1
2,638,574 + +0.6
2,638,579 + -0.2
2,638,688 - +0.4
2,638,714 + -0.3
2,639,345 + DVU2528 0.16 +0.1
2,639,467 - DVU2528 0.77 -2.1
2,639,521 - -0.3

Or see this region's nucleotide sequence