Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2351

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgid and DVU2351 are separated by 72 nucleotidesDVU2351 and DVU2352 are separated by 100 nucleotides DVU2350: gid - gid protein (TIGR), at 2,445,526 to 2,446,950 gid DVU2351: DVU2351 - hypothetical protein (TIGR), at 2,447,023 to 2,447,391 DVU2351 DVU2352: DVU2352 - glycosyl transferase, group 2 family protein (TIGR), at 2,447,492 to 2,449,129 DVU2352 Position (kb) 2447 2448Strain fitness (log2 ratio) -2 -1 0 1at 2446.179 kb on + strand, within gidat 2446.219 kb on + strand, within gidat 2446.255 kb on - strand, within gidat 2446.257 kb on + strand, within gidat 2446.281 kb on + strand, within gidat 2446.293 kb on + strand, within gidat 2446.301 kb on - strand, within gidat 2446.301 kb on - strand, within gidat 2446.317 kb on + strand, within gidat 2446.376 kb on + strand, within gidat 2446.381 kb on + strand, within gidat 2446.409 kb on + strand, within gidat 2446.506 kb on + strand, within gidat 2446.512 kb on + strand, within gidat 2446.588 kb on + strand, within gidat 2446.596 kb on - strand, within gidat 2446.596 kb on - strand, within gidat 2446.704 kb on + strand, within gidat 2446.774 kb on - strand, within gidat 2446.817 kb on - strandat 2446.826 kb on + strandat 2446.855 kb on - strandat 2446.924 kb on - strandat 2446.929 kb on - strandat 2447.010 kb on + strandat 2447.044 kb on + strandat 2447.080 kb on - strand, within DVU2351at 2447.139 kb on - strand, within DVU2351at 2447.233 kb on + strand, within DVU2351at 2447.270 kb on - strand, within DVU2351at 2447.385 kb on + strandat 2447.423 kb on - strandat 2447.423 kb on - strandat 2447.423 kb on - strandat 2447.433 kb on + strandat 2447.447 kb on + strandat 2447.483 kb on + strandat 2447.494 kb on + strandat 2447.502 kb on - strandat 2447.502 kb on - strandat 2447.502 kb on - strandat 2447.512 kb on - strandat 2447.553 kb on + strandat 2447.591 kb on + strandat 2447.638 kb on - strandat 2447.831 kb on + strand, within DVU2352at 2447.906 kb on + strand, within DVU2352at 2447.929 kb on - strand, within DVU2352at 2447.931 kb on + strand, within DVU2352at 2447.959 kb on + strand, within DVU2352at 2447.969 kb on + strand, within DVU2352at 2447.977 kb on - strand, within DVU2352at 2448.016 kb on + strand, within DVU2352at 2448.016 kb on - strand, within DVU2352at 2448.076 kb on + strand, within DVU2352at 2448.229 kb on + strand, within DVU2352at 2448.272 kb on - strand, within DVU2352at 2448.286 kb on + strand, within DVU2352at 2448.294 kb on - strand, within DVU2352at 2448.294 kb on - strand, within DVU2352at 2448.352 kb on + strand, within DVU2352at 2448.359 kb on + strand, within DVU2352

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,446,179 + gid DVU2350 0.46 -1.4
2,446,219 + gid DVU2350 0.49 +0.4
2,446,255 - gid DVU2350 0.51 -0.3
2,446,257 + gid DVU2350 0.51 +0.1
2,446,281 + gid DVU2350 0.53 -0.4
2,446,293 + gid DVU2350 0.54 -0.2
2,446,301 - gid DVU2350 0.54 -1.1
2,446,301 - gid DVU2350 0.54 -0.2
2,446,317 + gid DVU2350 0.56 -0.1
2,446,376 + gid DVU2350 0.60 -0.4
2,446,381 + gid DVU2350 0.60 -0.3
2,446,409 + gid DVU2350 0.62 -0.3
2,446,506 + gid DVU2350 0.69 -0.5
2,446,512 + gid DVU2350 0.69 +0.1
2,446,588 + gid DVU2350 0.75 -0.2
2,446,596 - gid DVU2350 0.75 +0.2
2,446,596 - gid DVU2350 0.75 -0.5
2,446,704 + gid DVU2350 0.83 +0.0
2,446,774 - gid DVU2350 0.88 +0.7
2,446,817 - -0.4
2,446,826 + +0.0
2,446,855 - -1.1
2,446,924 - -0.3
2,446,929 - +0.1
2,447,010 + +0.2
2,447,044 + -0.8
2,447,080 - DVU2351 0.15 -0.9
2,447,139 - DVU2351 0.31 -1.8
2,447,233 + DVU2351 0.57 -0.4
2,447,270 - DVU2351 0.67 +0.5
2,447,385 + -0.7
2,447,423 - -0.4
2,447,423 - -0.3
2,447,423 - -0.1
2,447,433 + -1.9
2,447,447 + +1.1
2,447,483 + -1.2
2,447,494 + -0.7
2,447,502 - -0.1
2,447,502 - -0.7
2,447,502 - -2.1
2,447,512 - -0.3
2,447,553 + -1.1
2,447,591 + +0.6
2,447,638 - -0.4
2,447,831 + DVU2352 0.21 -2.3
2,447,906 + DVU2352 0.25 -0.1
2,447,929 - DVU2352 0.27 -0.7
2,447,931 + DVU2352 0.27 -0.2
2,447,959 + DVU2352 0.29 -0.4
2,447,969 + DVU2352 0.29 -0.4
2,447,977 - DVU2352 0.30 -0.8
2,448,016 + DVU2352 0.32 -0.1
2,448,016 - DVU2352 0.32 -0.1
2,448,076 + DVU2352 0.36 +0.1
2,448,229 + DVU2352 0.45 -0.1
2,448,272 - DVU2352 0.48 +0.3
2,448,286 + DVU2352 0.48 -0.3
2,448,294 - DVU2352 0.49 -0.3
2,448,294 - DVU2352 0.49 +0.1
2,448,352 + DVU2352 0.53 +0.8
2,448,359 + DVU2352 0.53 +0.2

Or see this region's nucleotide sequence