Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2332

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2331 and proC are separated by 330 nucleotidesproC and ndk overlap by 1 nucleotidesndk and DVU2335 are separated by 551 nucleotides DVU2331: DVU2331 - Smr family protein (TIGR), at 2,427,033 to 2,428,262 DVU2331 DVU2332: proC - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data), at 2,428,593 to 2,429,390 proC DVU2333: ndk - nucleoside diphosphate kinase (TIGR), at 2,429,390 to 2,429,809 ndk DVU2335: DVU2335 - conserved domain protein (TIGR), at 2,430,361 to 2,431,911 DVU2335 Position (kb) 2428 2429 2430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2427.703 kb on - strand, within DVU2331at 2427.799 kb on + strand, within DVU2331at 2427.804 kb on + strand, within DVU2331at 2427.812 kb on - strand, within DVU2331at 2427.814 kb on + strand, within DVU2331at 2427.915 kb on + strand, within DVU2331at 2427.915 kb on + strand, within DVU2331at 2427.950 kb on - strand, within DVU2331at 2428.366 kb on - strandat 2428.467 kb on + strandat 2428.826 kb on - strand, within proCat 2428.842 kb on - strand, within proCat 2428.933 kb on + strand, within proCat 2429.115 kb on + strand, within proCat 2429.612 kb on + strand, within ndkat 2429.658 kb on + strand, within ndkat 2429.666 kb on - strand, within ndkat 2429.666 kb on - strand, within ndkat 2429.706 kb on + strand, within ndkat 2429.712 kb on + strand, within ndkat 2429.859 kb on - strandat 2429.923 kb on + strandat 2430.000 kb on - strandat 2430.069 kb on - strandat 2430.072 kb on + strandat 2430.180 kb on + strandat 2430.227 kb on - strandat 2430.268 kb on - strandat 2430.297 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
remove
2,427,703 - DVU2331 0.54 -0.1
2,427,799 + DVU2331 0.62 -1.1
2,427,804 + DVU2331 0.63 +0.8
2,427,812 - DVU2331 0.63 -0.7
2,427,814 + DVU2331 0.63 -0.6
2,427,915 + DVU2331 0.72 -1.3
2,427,915 + DVU2331 0.72 +1.2
2,427,950 - DVU2331 0.75 -0.0
2,428,366 - -0.2
2,428,467 + +0.8
2,428,826 - proC DVU2332 0.29 -2.0
2,428,842 - proC DVU2332 0.31 -1.8
2,428,933 + proC DVU2332 0.43 -2.9
2,429,115 + proC DVU2332 0.65 -3.1
2,429,612 + ndk DVU2333 0.53 +0.3
2,429,658 + ndk DVU2333 0.64 +0.0
2,429,666 - ndk DVU2333 0.66 -0.3
2,429,666 - ndk DVU2333 0.66 +0.3
2,429,706 + ndk DVU2333 0.75 -0.8
2,429,712 + ndk DVU2333 0.77 -0.2
2,429,859 - -1.1
2,429,923 + -0.3
2,430,000 - -1.8
2,430,069 - +1.0
2,430,072 + -0.1
2,430,180 + +0.0
2,430,227 - -0.7
2,430,268 - +2.3
2,430,297 + -0.7

Or see this region's nucleotide sequence