Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2305

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2303 and DVU2305 are separated by 327 nucleotidesDVU2305 and DVU2306 overlap by 8 nucleotides DVU2303: DVU2303 - conserved domain protein (TIGR), at 2,396,735 to 2,398,162 DVU2303 DVU2305: DVU2305 - conserved hypothetical protein (TIGR), at 2,398,490 to 2,399,119 DVU2305 DVU2306: DVU2306 - phosphate transporter family protein (TIGR), at 2,399,112 to 2,400,122 DVU2306 Position (kb) 2398 2399 2400Strain fitness (log2 ratio) -3 -2 -1 0 1at 2397.952 kb on - strand, within DVU2303at 2397.952 kb on - strand, within DVU2303at 2397.964 kb on - strand, within DVU2303at 2398.168 kb on + strandat 2398.264 kb on - strandat 2398.276 kb on - strandat 2398.378 kb on - strandat 2398.385 kb on + strandat 2398.720 kb on + strand, within DVU2305at 2398.729 kb on + strand, within DVU2305at 2398.737 kb on - strand, within DVU2305at 2398.848 kb on - strand, within DVU2305at 2399.112 kb on - strandat 2399.181 kb on + strandat 2399.193 kb on + strandat 2399.248 kb on - strand, within DVU2306at 2399.348 kb on - strand, within DVU2306at 2399.348 kb on - strand, within DVU2306at 2399.348 kb on - strand, within DVU2306at 2399.416 kb on - strand, within DVU2306at 2399.456 kb on + strand, within DVU2306at 2399.461 kb on - strand, within DVU2306at 2399.481 kb on + strand, within DVU2306at 2399.484 kb on - strand, within DVU2306at 2399.800 kb on - strand, within DVU2306

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,397,952 - DVU2303 0.85 +0.2
2,397,952 - DVU2303 0.85 -0.9
2,397,964 - DVU2303 0.86 -1.1
2,398,168 + +0.1
2,398,264 - -0.2
2,398,276 - +0.9
2,398,378 - +1.2
2,398,385 + -0.4
2,398,720 + DVU2305 0.37 +0.3
2,398,729 + DVU2305 0.38 -1.1
2,398,737 - DVU2305 0.39 -1.4
2,398,848 - DVU2305 0.57 -1.2
2,399,112 - -1.9
2,399,181 + -2.2
2,399,193 + -0.9
2,399,248 - DVU2306 0.13 -0.0
2,399,348 - DVU2306 0.23 +1.2
2,399,348 - DVU2306 0.23 -2.1
2,399,348 - DVU2306 0.23 +0.2
2,399,416 - DVU2306 0.30 +0.9
2,399,456 + DVU2306 0.34 -0.1
2,399,461 - DVU2306 0.35 +0.4
2,399,481 + DVU2306 0.36 -1.9
2,399,484 - DVU2306 0.37 -2.6
2,399,800 - DVU2306 0.68 -3.0

Or see this region's nucleotide sequence