Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2287

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2286 and DVU2287 are separated by 3 nucleotidesDVU2287 and DVU2288 are separated by 12 nucleotidesDVU2288 and b2488 are separated by 1 nucleotides DVU2286: DVU2286 - hydrogenase, CooM subunit, putative (TIGR), at 2,377,289 to 2,381,050 DVU2286 DVU2287: DVU2287 - hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR), at 2,381,054 to 2,382,019 DVU2287 DVU2288: DVU2288 - hydrogenase, CooL subunit, putative (TIGR), at 2,382,032 to 2,382,466 DVU2288 DVU2289: b2488 - hydrogenase, CooX subunit, putative (TIGR), at 2,382,468 to 2,383,103 b2488 Position (kb) 2381 2382 2383Strain fitness (log2 ratio) -2 -1 0 1at 2380.060 kb on + strand, within DVU2286at 2380.068 kb on - strand, within DVU2286at 2380.126 kb on - strand, within DVU2286at 2380.254 kb on - strand, within DVU2286at 2380.259 kb on - strand, within DVU2286at 2380.270 kb on + strand, within DVU2286at 2380.280 kb on + strand, within DVU2286at 2380.359 kb on - strand, within DVU2286at 2380.554 kb on + strand, within DVU2286at 2380.635 kb on + strand, within DVU2286at 2381.042 kb on - strandat 2381.044 kb on + strandat 2381.131 kb on + strandat 2381.139 kb on - strandat 2381.346 kb on - strand, within DVU2287at 2381.490 kb on - strand, within DVU2287at 2381.605 kb on + strand, within DVU2287at 2382.243 kb on - strand, within DVU2288at 2382.750 kb on - strand, within b2488at 2382.926 kb on + strand, within b2488

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,380,060 + DVU2286 0.74 +0.1
2,380,068 - DVU2286 0.74 -1.0
2,380,126 - DVU2286 0.75 -1.8
2,380,254 - DVU2286 0.79 -0.3
2,380,259 - DVU2286 0.79 +1.4
2,380,270 + DVU2286 0.79 -2.0
2,380,280 + DVU2286 0.80 -2.2
2,380,359 - DVU2286 0.82 +1.2
2,380,554 + DVU2286 0.87 +1.3
2,380,635 + DVU2286 0.89 +1.0
2,381,042 - -0.5
2,381,044 + +0.4
2,381,131 + +0.7
2,381,139 - -0.3
2,381,346 - DVU2287 0.30 -1.8
2,381,490 - DVU2287 0.45 -1.3
2,381,605 + DVU2287 0.57 -0.8
2,382,243 - DVU2288 0.49 -0.8
2,382,750 - b2488 DVU2289 0.44 -0.4
2,382,926 + b2488 DVU2289 0.72 -0.4

Or see this region's nucleotide sequence