Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2256

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthyX and ruvB are separated by 17 nucleotidesruvB and ruvA are separated by 0 nucleotidesruvA and DVU2257 are separated by 38 nucleotidesDVU2257 and ruvC are separated by 176 nucleotidesruvC and DVU2259 are separated by 74 nucleotides DVU2254: thyX - thymidylate synthase ThyX (TIGR), at 2,349,512 to 2,350,249 thyX DVU2255: ruvB - Holliday junction DNA helicase RuvB (TIGR), at 2,350,267 to 2,351,229 ruvB DVU2256: ruvA - Holliday junction DNA helicase RuvA (TIGR), at 2,351,230 to 2,351,838 ruvA DVU2257: DVU2257 - hypothetical protein (TIGR), at 2,351,877 to 2,352,035 DVU2257 DVU2258: ruvC - crossover junction endodeoxyribonuclease RuvC (TIGR), at 2,352,212 to 2,352,712 ruvC DVU2259: DVU2259 - conserved hypothetical protein TIGR01033 (TIGR), at 2,352,787 to 2,353,530 DVU2259 Position (kb) 2351 2352Strain fitness (log2 ratio) -2 -1 0 1at 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.297 kb on - strandat 2350.768 kb on - strand, within ruvBat 2350.787 kb on + strand, within ruvBat 2350.795 kb on - strand, within ruvBat 2350.893 kb on - strand, within ruvBat 2350.987 kb on - strand, within ruvBat 2351.245 kb on - strandat 2351.334 kb on - strand, within ruvAat 2351.382 kb on - strand, within ruvAat 2351.878 kb on - strandat 2351.883 kb on - strandat 2351.949 kb on + strand, within DVU2257at 2351.956 kb on + strand, within DVU2257at 2352.006 kb on - strand, within DVU2257at 2352.064 kb on - strandat 2352.203 kb on - strandat 2352.209 kb on - strandat 2352.215 kb on + strandat 2352.282 kb on - strand, within ruvCat 2352.324 kb on - strand, within ruvCat 2352.555 kb on + strand, within ruvCat 2352.565 kb on - strand, within ruvCat 2352.653 kb on + strand, within ruvCat 2352.668 kb on - strandat 2352.775 kb on + strandat 2352.785 kb on + strandat 2352.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,350,259 - +0.2
2,350,259 - -0.0
2,350,259 - -0.4
2,350,259 - -0.9
2,350,259 - -0.3
2,350,259 - -0.1
2,350,297 - -1.6
2,350,768 - ruvB DVU2255 0.52 -1.4
2,350,787 + ruvB DVU2255 0.54 -1.0
2,350,795 - ruvB DVU2255 0.55 -0.1
2,350,893 - ruvB DVU2255 0.65 -0.3
2,350,987 - ruvB DVU2255 0.75 -0.1
2,351,245 - +0.0
2,351,334 - ruvA DVU2256 0.17 -0.9
2,351,382 - ruvA DVU2256 0.25 -0.6
2,351,878 - -0.7
2,351,883 - +0.4
2,351,949 + DVU2257 0.45 +0.2
2,351,956 + DVU2257 0.50 -0.1
2,352,006 - DVU2257 0.81 -0.2
2,352,064 - -0.4
2,352,203 - -1.3
2,352,209 - +0.1
2,352,215 + -0.7
2,352,282 - ruvC DVU2258 0.14 -2.1
2,352,324 - ruvC DVU2258 0.22 -1.0
2,352,555 + ruvC DVU2258 0.68 -0.6
2,352,565 - ruvC DVU2258 0.70 -2.2
2,352,653 + ruvC DVU2258 0.88 -1.0
2,352,668 - -1.1
2,352,775 + -0.0
2,352,785 + -0.5
2,352,793 - -0.2

Or see this region's nucleotide sequence