Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2237

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2234 and DVU2235 are separated by 108 nucleotidesDVU2235 and DVU2236 are separated by 9 nucleotidesDVU2236 and cbiB are separated by 58 nucleotidescbiB and DVU2238 overlap by 4 nucleotidesDVU2238 and DVU2239 are separated by 242 nucleotides DVU2234: DVU2234 - conserved hypothetical protein TIGR00275 (TIGR), at 2,327,596 to 2,328,765 DVU2234 DVU2235: DVU2235 - conserved hypothetical protein (TIGR), at 2,328,874 to 2,329,083 DVU2235 DVU2236: DVU2236 - hypothetical protein (TIGR), at 2,329,093 to 2,329,197 DVU2236 DVU2237: cbiB - cobalamin biosynthesis protein CobD, putative (TIGR), at 2,329,256 to 2,330,218 cbiB DVU2238: DVU2238 - RNA methyltransferase, TrmH family (TIGR), at 2,330,215 to 2,330,694 DVU2238 DVU2239: DVU2239 - glycosyl hydrolase, family 3 (TIGR), at 2,330,937 to 2,332,382 DVU2239 Position (kb) 2329 2330 2331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2328.385 kb on - strand, within DVU2234at 2328.427 kb on + strand, within DVU2234at 2328.646 kb on + strand, within DVU2234at 2328.672 kb on - strandat 2328.735 kb on - strandat 2329.097 kb on - strandat 2329.097 kb on - strandat 2329.183 kb on + strand, within DVU2236at 2329.341 kb on - strandat 2329.378 kb on + strand, within cbiBat 2329.378 kb on - strand, within cbiBat 2329.408 kb on + strand, within cbiBat 2329.623 kb on + strand, within cbiBat 2329.635 kb on + strand, within cbiBat 2329.831 kb on - strand, within cbiBat 2329.884 kb on - strand, within cbiBat 2329.901 kb on + strand, within cbiBat 2329.906 kb on - strand, within cbiBat 2329.958 kb on - strand, within cbiBat 2330.087 kb on - strand, within cbiBat 2330.309 kb on - strand, within DVU2238at 2330.324 kb on - strand, within DVU2238at 2330.351 kb on + strand, within DVU2238at 2330.391 kb on - strand, within DVU2238at 2330.428 kb on + strand, within DVU2238at 2330.476 kb on + strand, within DVU2238at 2330.484 kb on - strand, within DVU2238at 2330.635 kb on - strand, within DVU2238at 2330.732 kb on + strandat 2330.824 kb on + strandat 2330.824 kb on + strandat 2330.842 kb on - strandat 2330.868 kb on - strandat 2331.041 kb on - strandat 2331.131 kb on + strand, within DVU2239

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,328,385 - DVU2234 0.67 -0.1
2,328,427 + DVU2234 0.71 +0.1
2,328,646 + DVU2234 0.90 -1.3
2,328,672 - -0.4
2,328,735 - +0.4
2,329,097 - -0.2
2,329,097 - -0.1
2,329,183 + DVU2236 0.86 +0.0
2,329,341 - -2.9
2,329,378 + cbiB DVU2237 0.13 -1.6
2,329,378 - cbiB DVU2237 0.13 -1.7
2,329,408 + cbiB DVU2237 0.16 -0.5
2,329,623 + cbiB DVU2237 0.38 -1.2
2,329,635 + cbiB DVU2237 0.39 -0.6
2,329,831 - cbiB DVU2237 0.60 -0.1
2,329,884 - cbiB DVU2237 0.65 -1.5
2,329,901 + cbiB DVU2237 0.67 -1.1
2,329,906 - cbiB DVU2237 0.67 -1.5
2,329,958 - cbiB DVU2237 0.73 -0.2
2,330,087 - cbiB DVU2237 0.86 -1.0
2,330,309 - DVU2238 0.20 -0.3
2,330,324 - DVU2238 0.23 -0.5
2,330,351 + DVU2238 0.28 -0.4
2,330,391 - DVU2238 0.37 +0.2
2,330,428 + DVU2238 0.44 -0.3
2,330,476 + DVU2238 0.54 -0.2
2,330,484 - DVU2238 0.56 +0.4
2,330,635 - DVU2238 0.88 +0.0
2,330,732 + -0.4
2,330,824 + +1.8
2,330,824 + +0.4
2,330,842 - -0.1
2,330,868 - -0.5
2,331,041 - -0.0
2,331,131 + DVU2239 0.13 -0.8

Or see this region's nucleotide sequence