Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2234 and DVU2235 are separated by 108 nucleotides DVU2235 and DVU2236 are separated by 9 nucleotides DVU2236 and cbiB are separated by 58 nucleotides cbiB and DVU2238 overlap by 4 nucleotides DVU2238 and DVU2239 are separated by 242 nucleotides
DVU2234: DVU2234 - conserved hypothetical protein TIGR00275 (TIGR), at 2,327,596 to 2,328,765
DVU2234
DVU2235: DVU2235 - conserved hypothetical protein (TIGR), at 2,328,874 to 2,329,083
DVU2235
DVU2236: DVU2236 - hypothetical protein (TIGR), at 2,329,093 to 2,329,197
DVU2236
DVU2237: cbiB - cobalamin biosynthesis protein CobD, putative (TIGR), at 2,329,256 to 2,330,218
cbiB
DVU2238: DVU2238 - RNA methyltransferase, TrmH family (TIGR), at 2,330,215 to 2,330,694
DVU2238
DVU2239: DVU2239 - glycosyl hydrolase, family 3 (TIGR), at 2,330,937 to 2,332,382
DVU2239
Position (kb)
2329
2330
2331 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2328.385 kb on - strand, within DVU2234 at 2328.427 kb on + strand, within DVU2234 at 2328.646 kb on + strand, within DVU2234 at 2328.672 kb on - strand at 2328.735 kb on - strand at 2329.097 kb on - strand at 2329.097 kb on - strand at 2329.183 kb on + strand, within DVU2236 at 2329.341 kb on - strand at 2329.378 kb on + strand, within cbiB at 2329.378 kb on - strand, within cbiB at 2329.408 kb on + strand, within cbiB at 2329.623 kb on + strand, within cbiB at 2329.635 kb on + strand, within cbiB at 2329.831 kb on - strand, within cbiB at 2329.884 kb on - strand, within cbiB at 2329.901 kb on + strand, within cbiB at 2329.906 kb on - strand, within cbiB at 2329.958 kb on - strand, within cbiB at 2330.087 kb on - strand, within cbiB at 2330.309 kb on - strand, within DVU2238 at 2330.324 kb on - strand, within DVU2238 at 2330.351 kb on + strand, within DVU2238 at 2330.391 kb on - strand, within DVU2238 at 2330.428 kb on + strand, within DVU2238 at 2330.476 kb on + strand, within DVU2238 at 2330.484 kb on - strand, within DVU2238 at 2330.635 kb on - strand, within DVU2238 at 2330.732 kb on + strand at 2330.824 kb on + strand at 2330.824 kb on + strand at 2330.842 kb on - strand at 2330.868 kb on - strand at 2331.041 kb on - strand at 2331.131 kb on + strand, within DVU2239
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 2,328,385 - DVU2234 0.67 -0.1 2,328,427 + DVU2234 0.71 +0.1 2,328,646 + DVU2234 0.90 -1.3 2,328,672 - -0.4 2,328,735 - +0.4 2,329,097 - -0.2 2,329,097 - -0.1 2,329,183 + DVU2236 0.86 +0.0 2,329,341 - -2.9 2,329,378 + cbiB DVU2237 0.13 -1.6 2,329,378 - cbiB DVU2237 0.13 -1.7 2,329,408 + cbiB DVU2237 0.16 -0.5 2,329,623 + cbiB DVU2237 0.38 -1.2 2,329,635 + cbiB DVU2237 0.39 -0.6 2,329,831 - cbiB DVU2237 0.60 -0.1 2,329,884 - cbiB DVU2237 0.65 -1.5 2,329,901 + cbiB DVU2237 0.67 -1.1 2,329,906 - cbiB DVU2237 0.67 -1.5 2,329,958 - cbiB DVU2237 0.73 -0.2 2,330,087 - cbiB DVU2237 0.86 -1.0 2,330,309 - DVU2238 0.20 -0.3 2,330,324 - DVU2238 0.23 -0.5 2,330,351 + DVU2238 0.28 -0.4 2,330,391 - DVU2238 0.37 +0.2 2,330,428 + DVU2238 0.44 -0.3 2,330,476 + DVU2238 0.54 -0.2 2,330,484 - DVU2238 0.56 +0.4 2,330,635 - DVU2238 0.88 +0.0 2,330,732 + -0.4 2,330,824 + +1.8 2,330,824 + +0.4 2,330,842 - -0.1 2,330,868 - -0.5 2,331,041 - -0.0 2,331,131 + DVU2239 0.13 -0.8
Or see this region's nucleotide sequence