Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2198

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2197 and DVU2198 are separated by 524 nucleotidesDVU2198 and DVU2200 are separated by 398 nucleotides DVU2197: DVU2197 - site-specific recombinase, phage integrase family (TIGR), at 2,292,764 to 2,293,693 DVU2197 DVU2198: DVU2198 - hypothetical protein (TIGR), at 2,294,218 to 2,294,415 DVU2198 DVU2200: DVU2200 - hypothetical protein (TIGR), at 2,294,814 to 2,295,194 DVU2200 Position (kb) 2294 2295Strain fitness (log2 ratio) -3 -2 -1 0 1at 2293.233 kb on - strand, within DVU2197at 2293.238 kb on - strand, within DVU2197at 2293.265 kb on + strand, within DVU2197at 2293.365 kb on - strand, within DVU2197at 2293.394 kb on - strand, within DVU2197at 2293.408 kb on + strand, within DVU2197at 2293.425 kb on - strand, within DVU2197at 2293.426 kb on + strand, within DVU2197at 2293.440 kb on + strand, within DVU2197at 2293.485 kb on + strand, within DVU2197at 2293.485 kb on + strand, within DVU2197at 2293.485 kb on + strand, within DVU2197at 2293.493 kb on - strand, within DVU2197at 2293.554 kb on + strand, within DVU2197at 2293.562 kb on - strand, within DVU2197at 2293.595 kb on - strand, within DVU2197at 2293.661 kb on + strandat 2293.689 kb on - strandat 2293.697 kb on - strandat 2293.771 kb on - strandat 2293.773 kb on - strandat 2293.778 kb on - strandat 2293.835 kb on - strandat 2294.158 kb on + strandat 2294.206 kb on - strandat 2294.237 kb on - strandat 2294.344 kb on + strand, within DVU2198at 2294.775 kb on - strandat 2294.828 kb on + strandat 2294.871 kb on + strand, within DVU2200at 2294.943 kb on - strand, within DVU2200at 2295.194 kb on + strandat 2295.279 kb on - strandat 2295.296 kb on - strandat 2295.347 kb on - strandat 2295.347 kb on - strandat 2295.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,293,233 - DVU2197 0.50 -0.5
2,293,238 - DVU2197 0.51 -0.6
2,293,265 + DVU2197 0.54 -0.1
2,293,365 - DVU2197 0.65 -0.4
2,293,394 - DVU2197 0.68 -2.9
2,293,408 + DVU2197 0.69 +0.1
2,293,425 - DVU2197 0.71 +0.2
2,293,426 + DVU2197 0.71 +0.6
2,293,440 + DVU2197 0.73 +0.0
2,293,485 + DVU2197 0.78 -1.8
2,293,485 + DVU2197 0.78 +0.1
2,293,485 + DVU2197 0.78 +0.6
2,293,493 - DVU2197 0.78 -0.2
2,293,554 + DVU2197 0.85 -0.2
2,293,562 - DVU2197 0.86 +0.9
2,293,595 - DVU2197 0.89 -0.2
2,293,661 + +0.4
2,293,689 - -0.0
2,293,697 - -0.1
2,293,771 - +0.0
2,293,773 - -0.4
2,293,778 - -0.2
2,293,835 - -3.5
2,294,158 + -0.4
2,294,206 - -1.4
2,294,237 - -0.1
2,294,344 + DVU2198 0.64 -1.5
2,294,775 - +0.3
2,294,828 + +0.1
2,294,871 + DVU2200 0.15 +1.1
2,294,943 - DVU2200 0.34 -0.2
2,295,194 + -0.2
2,295,279 - -1.3
2,295,296 - +0.7
2,295,347 - +0.1
2,295,347 - +0.0
2,295,372 - -0.5

Or see this region's nucleotide sequence