Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2073

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheA-3 and cheY-2 are separated by 95 nucleotidescheY-2 and DVU2074 are separated by 9 nucleotidesDVU2074 and parA overlap by 7 nucleotides DVU2072: cheA-3 - chemotaxis protein CheA (TIGR), at 2,154,133 to 2,157,402 cheA-3 DVU2073: cheY-2 - chemotaxis protein CheY (TIGR), at 2,157,498 to 2,157,866 cheY-2 DVU2074: DVU2074 - chemotaxis protein CheW (TIGR), at 2,157,876 to 2,158,526 DVU2074 DVU2075: parA - ParA family protein (TIGR), at 2,158,520 to 2,159,296 parA Position (kb) 2157 2158Strain fitness (log2 ratio) -2 -1 0 1at 2156.542 kb on - strand, within cheA-3at 2156.618 kb on + strand, within cheA-3at 2156.737 kb on + strand, within cheA-3at 2156.754 kb on + strand, within cheA-3at 2156.773 kb on + strand, within cheA-3at 2156.803 kb on - strand, within cheA-3at 2156.864 kb on - strand, within cheA-3at 2157.125 kb on - strandat 2157.281 kb on + strandat 2157.289 kb on + strandat 2157.297 kb on - strandat 2157.300 kb on - strandat 2157.386 kb on + strandat 2157.410 kb on + strandat 2157.410 kb on + strandat 2157.418 kb on - strandat 2157.418 kb on - strandat 2157.428 kb on - strandat 2157.458 kb on + strandat 2157.458 kb on + strandat 2157.458 kb on + strandat 2157.458 kb on + strandat 2157.458 kb on + strandat 2157.466 kb on - strandat 2157.555 kb on - strand, within cheY-2at 2157.584 kb on - strand, within cheY-2at 2157.664 kb on + strand, within cheY-2at 2157.664 kb on + strand, within cheY-2at 2157.672 kb on - strand, within cheY-2at 2157.682 kb on - strand, within cheY-2at 2157.682 kb on - strand, within cheY-2at 2157.775 kb on - strand, within cheY-2at 2157.782 kb on + strand, within cheY-2at 2157.857 kb on - strandat 2157.948 kb on - strand, within DVU2074at 2158.029 kb on - strand, within DVU2074at 2158.099 kb on + strand, within DVU2074at 2158.120 kb on + strand, within DVU2074at 2158.208 kb on + strand, within DVU2074at 2158.767 kb on + strand, within parAat 2158.847 kb on - strand, within parA

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,156,542 - cheA-3 DVU2072 0.74 -0.7
2,156,618 + cheA-3 DVU2072 0.76 -1.2
2,156,737 + cheA-3 DVU2072 0.80 -0.8
2,156,754 + cheA-3 DVU2072 0.80 -0.3
2,156,773 + cheA-3 DVU2072 0.81 -0.2
2,156,803 - cheA-3 DVU2072 0.82 +0.7
2,156,864 - cheA-3 DVU2072 0.84 -1.1
2,157,125 - -1.1
2,157,281 + -0.1
2,157,289 + -0.6
2,157,297 - -1.1
2,157,300 - -0.7
2,157,386 + -1.8
2,157,410 + +0.8
2,157,410 + -0.8
2,157,418 - -0.7
2,157,418 - -2.1
2,157,428 - -2.1
2,157,458 + -0.7
2,157,458 + -0.4
2,157,458 + -1.1
2,157,458 + -0.7
2,157,458 + -0.7
2,157,466 - -0.7
2,157,555 - cheY-2 DVU2073 0.15 -1.6
2,157,584 - cheY-2 DVU2073 0.23 +1.0
2,157,664 + cheY-2 DVU2073 0.45 -1.6
2,157,664 + cheY-2 DVU2073 0.45 -1.5
2,157,672 - cheY-2 DVU2073 0.47 -1.2
2,157,682 - cheY-2 DVU2073 0.50 -0.3
2,157,682 - cheY-2 DVU2073 0.50 -1.9
2,157,775 - cheY-2 DVU2073 0.75 -1.4
2,157,782 + cheY-2 DVU2073 0.77 -0.6
2,157,857 - -1.0
2,157,948 - DVU2074 0.11 -2.2
2,158,029 - DVU2074 0.24 -0.3
2,158,099 + DVU2074 0.34 -0.1
2,158,120 + DVU2074 0.37 -0.1
2,158,208 + DVU2074 0.51 -0.2
2,158,767 + parA DVU2075 0.32 +0.2
2,158,847 - parA DVU2075 0.42 -0.3

Or see this region's nucleotide sequence