Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2048

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF15206 and DVU2048 are separated by 48 nucleotidesDVU2048 and DORF15229 are separated by 47 nucleotidesDORF15229 and DVU2049 are separated by 234 nucleotides DORF15206: DORF15206 - no description, at 2,123,167 to 2,125,602 DORF15206 DVU2048: DVU2048 - hypothetical protein (TIGR), at 2,125,651 to 2,125,821 DVU2048 DORF15229: DORF15229 - no description, at 2,125,869 to 2,126,150 DORF15229 DVU2049: DVU2049 - transposase OrfA, IS3 family, degenerate (TIGR), at 2,126,385 to 2,126,851 DVU2049 Position (kb) 2125 2126Strain fitness (log2 ratio) -2 -1 0 1at 2124.699 kb on + strand, within DORF15206at 2124.699 kb on + strand, within DORF15206at 2124.707 kb on - strand, within DORF15206at 2124.777 kb on - strand, within DORF15206at 2124.790 kb on + strand, within DORF15206at 2124.840 kb on + strand, within DORF15206at 2124.863 kb on + strand, within DORF15206at 2124.906 kb on - strand, within DORF15206at 2124.966 kb on - strand, within DORF15206at 2125.233 kb on - strand, within DORF15206at 2125.344 kb on - strand, within DORF15206at 2125.346 kb on + strand, within DORF15206at 2125.354 kb on - strand, within DORF15206at 2125.402 kb on - strandat 2125.413 kb on + strandat 2125.414 kb on - strandat 2125.441 kb on - strandat 2125.745 kb on + strand, within DVU2048at 2126.072 kb on - strand, within DORF15229at 2126.109 kb on - strand, within DORF15229at 2126.152 kb on - strandat 2126.213 kb on + strandat 2126.324 kb on - strandat 2126.325 kb on - strandat 2126.325 kb on - strandat 2126.325 kb on - strandat 2126.404 kb on + strandat 2126.409 kb on + strandat 2126.483 kb on - strand, within DVU2049at 2126.503 kb on + strand, within DVU2049at 2126.523 kb on + strand, within DVU2049at 2126.531 kb on - strand, within DVU2049at 2126.645 kb on + strand, within DVU2049at 2126.683 kb on - strand, within DVU2049at 2126.691 kb on + strand, within DVU2049at 2126.698 kb on + strand, within DVU2049

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,124,699 + DORF15206 0.63 +0.2
2,124,699 + DORF15206 0.63 -0.0
2,124,707 - DORF15206 0.63 +0.4
2,124,777 - DORF15206 0.66 +1.2
2,124,790 + DORF15206 0.67 +0.2
2,124,840 + DORF15206 0.69 -0.8
2,124,863 + DORF15206 0.70 -1.3
2,124,906 - DORF15206 0.71 -0.5
2,124,966 - DORF15206 0.74 +0.1
2,125,233 - DORF15206 0.85 -0.6
2,125,344 - DORF15206 0.89 +0.3
2,125,346 + DORF15206 0.89 -0.0
2,125,354 - DORF15206 0.90 -0.4
2,125,402 - -0.6
2,125,413 + +0.7
2,125,414 - -0.0
2,125,441 - +0.6
2,125,745 + DVU2048 0.55 -2.6
2,126,072 - DORF15229 0.72 -0.8
2,126,109 - DORF15229 0.85 -0.3
2,126,152 - +0.0
2,126,213 + -0.1
2,126,324 - +0.0
2,126,325 - -0.2
2,126,325 - +0.2
2,126,325 - +0.2
2,126,404 + +0.1
2,126,409 + -2.1
2,126,483 - DVU2049 0.21 +0.4
2,126,503 + DVU2049 0.25 -0.0
2,126,523 + DVU2049 0.30 -0.8
2,126,531 - DVU2049 0.31 +0.2
2,126,645 + DVU2049 0.56 +0.1
2,126,683 - DVU2049 0.64 -0.0
2,126,691 + DVU2049 0.66 -0.3
2,126,698 + DVU2049 0.67 +0.3

Or see this region's nucleotide sequence