Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2028

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2026 and DORF15085 are separated by 20 nucleotidesDORF15085 and DVU2028 are separated by 82 nucleotidesDVU2028 and DVU2029 are separated by 44 nucleotidesDVU2029 and DVU2030 overlap by 4 nucleotides DVU2026: DVU2026 - conserved hypothetical protein (TIGR), at 2,109,863 to 2,110,453 DVU2026 DORF15085: DORF15085 - no description, at 2,110,474 to 2,111,085 DORF15085 DVU2028: DVU2028 - conserved domain protein (TIGR), at 2,111,168 to 2,111,395 DVU2028 DVU2029: DVU2029 - ISDvu2, transposase OrfA (TIGR), at 2,111,440 to 2,111,838 DVU2029 DVU2030: DVU2030 - ISDvu2, transposase OrfB (TIGR), at 2,111,835 to 2,112,677 DVU2030 Position (kb) 2111 2112Strain fitness (log2 ratio) -2 -1 0 1at 2110.169 kb on - strand, within DVU2026at 2110.179 kb on - strand, within DVU2026at 2110.293 kb on - strand, within DVU2026at 2110.417 kb on + strandat 2110.429 kb on + strandat 2111.229 kb on + strand, within DVU2028at 2111.244 kb on + strand, within DVU2028at 2111.258 kb on + strand, within DVU2028at 2111.266 kb on + strand, within DVU2028at 2111.302 kb on + strand, within DVU2028at 2111.302 kb on + strand, within DVU2028at 2111.310 kb on - strand, within DVU2028at 2111.311 kb on - strand, within DVU2028at 2111.334 kb on + strand, within DVU2028at 2111.334 kb on + strand, within DVU2028at 2111.342 kb on - strand, within DVU2028

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,110,169 - DVU2026 0.52 +0.5
2,110,179 - DVU2026 0.53 +0.5
2,110,293 - DVU2026 0.73 -0.3
2,110,417 + +0.4
2,110,429 + +1.2
2,111,229 + DVU2028 0.27 -0.5
2,111,244 + DVU2028 0.33 +0.1
2,111,258 + DVU2028 0.39 +0.2
2,111,266 + DVU2028 0.43 +0.1
2,111,302 + DVU2028 0.59 -0.1
2,111,302 + DVU2028 0.59 -0.2
2,111,310 - DVU2028 0.62 -1.9
2,111,311 - DVU2028 0.63 +0.1
2,111,334 + DVU2028 0.73 +1.2
2,111,334 + DVU2028 0.73 +0.3
2,111,342 - DVU2028 0.76 -0.3

Or see this region's nucleotide sequence