Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1931

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1929 and DVU1930 are separated by 34 nucleotidesDVU1930 and DVU1931 are separated by 25 nucleotidesDVU1931 and adk are separated by 483 nucleotides DVU1929: DVU1929 - hypothetical protein (TIGR), at 2,003,220 to 2,003,417 DVU1929 DVU1930: DVU1930 - TPR domain protein (TIGR), at 2,003,452 to 2,004,390 DVU1930 DVU1931: DVU1931 - iron-sulfur cluster-binding protein (TIGR), at 2,004,416 to 2,004,859 DVU1931 DVU1932: adk - adenylate kinase (TIGR), at 2,005,343 to 2,006,014 adk Position (kb) 2004 2005Strain fitness (log2 ratio) -3 -2 -1 0 1at 2004.455 kb on + strandat 2004.576 kb on + strand, within DVU1931at 2004.678 kb on + strand, within DVU1931at 2004.861 kb on - strandat 2005.015 kb on - strandat 2005.051 kb on + strandat 2005.163 kb on + strandat 2005.171 kb on - strandat 2005.178 kb on + strandat 2005.178 kb on + strandat 2005.178 kb on + strandat 2005.178 kb on + strandat 2005.181 kb on - strandat 2005.186 kb on - strandat 2005.186 kb on - strandat 2005.207 kb on - strandat 2005.275 kb on + strandat 2005.283 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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2,004,455 + -1.2
2,004,576 + DVU1931 0.36 -2.1
2,004,678 + DVU1931 0.59 -1.1
2,004,861 - -0.1
2,005,015 - -0.1
2,005,051 + -3.4
2,005,163 + -0.1
2,005,171 - -1.1
2,005,178 + -0.4
2,005,178 + -0.7
2,005,178 + -0.1
2,005,178 + -0.0
2,005,181 - -3.6
2,005,186 - -0.2
2,005,186 - +0.1
2,005,207 - -1.1
2,005,275 + -0.3
2,005,283 - -3.6

Or see this region's nucleotide sequence