Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1841

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcp and fbp are separated by 41 nucleotidesfbp and DVU1842 are separated by 92 nucleotides DVU1840: gcp - metalloendopeptidase, putative, glycoprotease family (TIGR), at 1,910,311 to 1,911,396 gcp DVU1841: fbp - fructose-1,6-bisphosphatase (TIGR), at 1,911,438 to 1,912,451 fbp DVU1842: DVU1842 - lipoprotein, putative (TIGR), at 1,912,544 to 1,913,500 DVU1842 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -1 0 1at 1911.439 kb on - strandat 1911.454 kb on + strandat 1911.462 kb on - strandat 1911.477 kb on - strandat 1911.766 kb on + strand, within fbpat 1911.774 kb on - strand, within fbpat 1912.219 kb on - strand, within fbpat 1912.322 kb on + strand, within fbpat 1912.363 kb on - strandat 1912.383 kb on - strandat 1912.477 kb on - strandat 1912.503 kb on - strandat 1912.582 kb on + strandat 1912.648 kb on + strand, within DVU1842at 1912.757 kb on - strand, within DVU1842

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,911,439 - -0.3
1,911,454 + -0.6
1,911,462 - +0.6
1,911,477 - +0.7
1,911,766 + fbp DVU1841 0.32 +0.3
1,911,774 - fbp DVU1841 0.33 -0.4
1,912,219 - fbp DVU1841 0.77 -0.0
1,912,322 + fbp DVU1841 0.87 -0.0
1,912,363 - -0.9
1,912,383 - -0.9
1,912,477 - -0.1
1,912,503 - -0.0
1,912,582 + +0.2
1,912,648 + DVU1842 0.11 +0.4
1,912,757 - DVU1842 0.22 -0.2

Or see this region's nucleotide sequence