Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gidA and DVU1830 are separated by 260 nucleotides DVU1830 and DORF37657 are separated by 94 nucleotides DORF37657 and DORF37658 overlap by 154 nucleotides
DVU1828: gidA - glucose inhibited division protein A (TIGR), at 1,893,556 to 1,895,445
gidA
DVU1830: DVU1830 - hypothetical protein (TIGR), at 1,895,706 to 1,896,770
DVU1830
DORF37657: DORF37657 - SEED: Magnesium and cobalt efflux protein CorC, at 1,896,865 to 1,897,251
DORF37657
DORF37658: DORF37658 - SEED: Magnesium and cobalt efflux protein CorC, at 1,897,098 to 1,897,691
DORF37658
Position (kb)
1895
1896
1897 Strain fitness (log2 ratio)
-2
-1
0
1 at 1894.977 kb on + strand, within gidA at 1895.086 kb on + strand, within gidA at 1895.087 kb on - strand, within gidA at 1895.098 kb on + strand, within gidA at 1895.621 kb on + strand at 1895.643 kb on - strand at 1895.673 kb on - strand at 1895.715 kb on + strand at 1895.748 kb on - strand at 1895.761 kb on + strand at 1895.789 kb on + strand at 1895.797 kb on - strand at 1895.861 kb on + strand, within DVU1830 at 1895.902 kb on - strand, within DVU1830 at 1895.935 kb on + strand, within DVU1830 at 1896.019 kb on + strand, within DVU1830 at 1896.115 kb on + strand, within DVU1830 at 1896.123 kb on - strand, within DVU1830 at 1896.123 kb on - strand, within DVU1830 at 1896.158 kb on + strand, within DVU1830 at 1896.385 kb on - strand, within DVU1830 at 1896.532 kb on + strand, within DVU1830 at 1896.535 kb on - strand, within DVU1830 at 1896.611 kb on + strand, within DVU1830 at 1896.716 kb on - strand at 1896.834 kb on + strand at 1896.842 kb on - strand at 1896.895 kb on + strand at 1897.074 kb on - strand, within DORF37657 at 1897.131 kb on - strand at 1897.197 kb on + strand at 1897.367 kb on - strand, within DORF37658 at 1897.401 kb on - strand, within DORF37658 at 1897.478 kb on + strand, within DORF37658 at 1897.552 kb on + strand, within DORF37658 at 1897.607 kb on - strand, within DORF37658 at 1897.719 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,894,977 + gidA DVU1828 0.75 +0.9 1,895,086 + gidA DVU1828 0.81 +0.2 1,895,087 - gidA DVU1828 0.81 -1.5 1,895,098 + gidA DVU1828 0.82 +0.5 1,895,621 + -0.4 1,895,643 - -1.5 1,895,673 - -0.8 1,895,715 + -0.7 1,895,748 - -1.8 1,895,761 + -1.6 1,895,789 + -0.5 1,895,797 - -1.4 1,895,861 + DVU1830 0.15 -2.7 1,895,902 - DVU1830 0.18 -1.8 1,895,935 + DVU1830 0.22 -1.8 1,896,019 + DVU1830 0.29 -0.0 1,896,115 + DVU1830 0.38 -2.4 1,896,123 - DVU1830 0.39 -1.4 1,896,123 - DVU1830 0.39 -1.1 1,896,158 + DVU1830 0.42 +1.0 1,896,385 - DVU1830 0.64 -0.8 1,896,532 + DVU1830 0.78 -0.8 1,896,535 - DVU1830 0.78 -2.4 1,896,611 + DVU1830 0.85 -1.8 1,896,716 - -1.8 1,896,834 + -0.6 1,896,842 - -1.2 1,896,895 + +0.2 1,897,074 - DORF37657 0.54 -0.2 1,897,131 - -0.4 1,897,197 + -0.9 1,897,367 - DORF37658 0.45 -0.4 1,897,401 - DORF37658 0.51 -0.4 1,897,478 + DORF37658 0.64 -0.6 1,897,552 + DORF37658 0.76 -0.4 1,897,607 - DORF37658 0.86 -0.5 1,897,719 + -0.0
Or see this region's nucleotide sequence