Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1830

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgidA and DVU1830 are separated by 260 nucleotidesDVU1830 and DORF37657 are separated by 94 nucleotidesDORF37657 and DORF37658 overlap by 154 nucleotides DVU1828: gidA - glucose inhibited division protein A (TIGR), at 1,893,556 to 1,895,445 gidA DVU1830: DVU1830 - hypothetical protein (TIGR), at 1,895,706 to 1,896,770 DVU1830 DORF37657: DORF37657 - SEED: Magnesium and cobalt efflux protein CorC, at 1,896,865 to 1,897,251 DORF37657 DORF37658: DORF37658 - SEED: Magnesium and cobalt efflux protein CorC, at 1,897,098 to 1,897,691 DORF37658 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -2 -1 0 1at 1894.977 kb on + strand, within gidAat 1895.086 kb on + strand, within gidAat 1895.087 kb on - strand, within gidAat 1895.098 kb on + strand, within gidAat 1895.621 kb on + strandat 1895.643 kb on - strandat 1895.673 kb on - strandat 1895.715 kb on + strandat 1895.748 kb on - strandat 1895.761 kb on + strandat 1895.789 kb on + strandat 1895.797 kb on - strandat 1895.861 kb on + strand, within DVU1830at 1895.902 kb on - strand, within DVU1830at 1895.935 kb on + strand, within DVU1830at 1896.019 kb on + strand, within DVU1830at 1896.115 kb on + strand, within DVU1830at 1896.123 kb on - strand, within DVU1830at 1896.123 kb on - strand, within DVU1830at 1896.158 kb on + strand, within DVU1830at 1896.385 kb on - strand, within DVU1830at 1896.532 kb on + strand, within DVU1830at 1896.535 kb on - strand, within DVU1830at 1896.611 kb on + strand, within DVU1830at 1896.716 kb on - strandat 1896.834 kb on + strandat 1896.842 kb on - strandat 1896.895 kb on + strandat 1897.074 kb on - strand, within DORF37657at 1897.131 kb on - strandat 1897.197 kb on + strandat 1897.367 kb on - strand, within DORF37658at 1897.401 kb on - strand, within DORF37658at 1897.478 kb on + strand, within DORF37658at 1897.552 kb on + strand, within DORF37658at 1897.607 kb on - strand, within DORF37658at 1897.719 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,894,977 + gidA DVU1828 0.75 +0.9
1,895,086 + gidA DVU1828 0.81 +0.2
1,895,087 - gidA DVU1828 0.81 -1.5
1,895,098 + gidA DVU1828 0.82 +0.5
1,895,621 + -0.4
1,895,643 - -1.5
1,895,673 - -0.8
1,895,715 + -0.7
1,895,748 - -1.8
1,895,761 + -1.6
1,895,789 + -0.5
1,895,797 - -1.4
1,895,861 + DVU1830 0.15 -2.7
1,895,902 - DVU1830 0.18 -1.8
1,895,935 + DVU1830 0.22 -1.8
1,896,019 + DVU1830 0.29 -0.0
1,896,115 + DVU1830 0.38 -2.4
1,896,123 - DVU1830 0.39 -1.4
1,896,123 - DVU1830 0.39 -1.1
1,896,158 + DVU1830 0.42 +1.0
1,896,385 - DVU1830 0.64 -0.8
1,896,532 + DVU1830 0.78 -0.8
1,896,535 - DVU1830 0.78 -2.4
1,896,611 + DVU1830 0.85 -1.8
1,896,716 - -1.8
1,896,834 + -0.6
1,896,842 - -1.2
1,896,895 + +0.2
1,897,074 - DORF37657 0.54 -0.2
1,897,131 - -0.4
1,897,197 + -0.9
1,897,367 - DORF37658 0.45 -0.4
1,897,401 - DORF37658 0.51 -0.4
1,897,478 + DORF37658 0.64 -0.6
1,897,552 + DORF37658 0.76 -0.4
1,897,607 - DORF37658 0.86 -0.5
1,897,719 + -0.0

Or see this region's nucleotide sequence