Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1743

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1741 and DVU1742 are separated by 469 nucleotidesDVU1742 and DVU1743 are separated by 5 nucleotidesDVU1743 and DVU1744 are separated by 83 nucleotidesDVU1744 and DVU1745 are separated by 84 nucleotides DVU1741: DVU1741 - hypothetical protein (TIGR), at 1,808,976 to 1,809,947 DVU1741 DVU1742: DVU1742 - prevent-host-death family protein (TIGR), at 1,810,417 to 1,810,656 DVU1742 DVU1743: DVU1743 - hypothetical protein (TIGR), at 1,810,662 to 1,811,099 DVU1743 DVU1744: DVU1744 - DNA-binding protein (TIGR), at 1,811,183 to 1,811,425 DVU1744 DVU1745: DVU1745 - DNA-binding protein (TIGR), at 1,811,510 to 1,812,031 DVU1745 Position (kb) 1810 1811 1812Strain fitness (log2 ratio) -3 -2 -1 0 1at 1809.682 kb on - strand, within DVU1741at 1809.697 kb on - strand, within DVU1741at 1809.697 kb on - strand, within DVU1741at 1809.725 kb on - strand, within DVU1741at 1809.730 kb on - strand, within DVU1741at 1809.730 kb on - strand, within DVU1741at 1809.775 kb on + strand, within DVU1741at 1809.822 kb on + strand, within DVU1741at 1809.856 kb on + strandat 1809.891 kb on - strandat 1809.957 kb on - strandat 1809.972 kb on - strandat 1810.241 kb on + strandat 1810.283 kb on - strandat 1810.283 kb on - strandat 1810.292 kb on + strandat 1810.372 kb on - strandat 1810.465 kb on + strand, within DVU1742at 1810.557 kb on - strand, within DVU1742at 1810.591 kb on + strand, within DVU1742at 1810.601 kb on + strand, within DVU1742at 1810.608 kb on + strand, within DVU1742at 1810.637 kb on - strandat 1810.645 kb on + strandat 1810.712 kb on - strand, within DVU1743at 1810.712 kb on - strand, within DVU1743at 1810.775 kb on - strand, within DVU1743at 1810.864 kb on + strand, within DVU1743at 1810.872 kb on - strand, within DVU1743at 1810.992 kb on + strand, within DVU1743at 1810.992 kb on + strand, within DVU1743at 1811.007 kb on + strand, within DVU1743at 1811.039 kb on + strand, within DVU1743at 1811.107 kb on + strandat 1811.108 kb on + strandat 1811.109 kb on + strandat 1811.117 kb on - strandat 1811.139 kb on - strandat 1811.140 kb on + strandat 1811.204 kb on + strandat 1811.242 kb on + strand, within DVU1744at 1811.242 kb on + strand, within DVU1744at 1811.304 kb on + strand, within DVU1744at 1811.339 kb on + strand, within DVU1744at 1811.356 kb on + strand, within DVU1744at 1811.364 kb on - strand, within DVU1744at 1811.384 kb on + strand, within DVU1744at 1811.499 kb on + strandat 1811.499 kb on + strandat 1811.506 kb on + strandat 1811.506 kb on + strandat 1811.596 kb on + strand, within DVU1745at 1811.769 kb on - strand, within DVU1745at 1811.774 kb on - strand, within DVU1745at 1811.802 kb on - strand, within DVU1745at 1811.874 kb on - strand, within DVU1745at 1811.902 kb on + strand, within DVU1745at 1811.907 kb on + strand, within DVU1745at 1811.907 kb on + strand, within DVU1745at 1811.907 kb on + strand, within DVU1745at 1811.915 kb on - strand, within DVU1745at 1811.915 kb on - strand, within DVU1745at 1811.915 kb on - strand, within DVU1745at 1811.915 kb on - strand, within DVU1745at 1811.929 kb on + strand, within DVU1745at 1811.983 kb on + strandat 1811.989 kb on + strandat 1811.997 kb on - strandat 1812.036 kb on + strandat 1812.079 kb on + strandat 1812.082 kb on - strandat 1812.084 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,809,682 - DVU1741 0.73 +0.2
1,809,697 - DVU1741 0.74 -1.3
1,809,697 - DVU1741 0.74 -1.3
1,809,725 - DVU1741 0.77 -0.0
1,809,730 - DVU1741 0.78 +0.5
1,809,730 - DVU1741 0.78 +0.2
1,809,775 + DVU1741 0.82 +0.5
1,809,822 + DVU1741 0.87 -0.1
1,809,856 + -1.4
1,809,891 - -0.5
1,809,957 - -0.4
1,809,972 - -2.0
1,810,241 + -0.3
1,810,283 - -0.4
1,810,283 - -1.5
1,810,292 + -0.1
1,810,372 - -1.3
1,810,465 + DVU1742 0.20 -0.3
1,810,557 - DVU1742 0.58 -0.8
1,810,591 + DVU1742 0.72 -1.0
1,810,601 + DVU1742 0.77 +0.4
1,810,608 + DVU1742 0.80 -0.3
1,810,637 - -2.2
1,810,645 + -0.2
1,810,712 - DVU1743 0.11 -2.4
1,810,712 - DVU1743 0.11 -1.0
1,810,775 - DVU1743 0.26 -0.6
1,810,864 + DVU1743 0.46 -0.2
1,810,872 - DVU1743 0.48 -3.4
1,810,992 + DVU1743 0.75 -1.5
1,810,992 + DVU1743 0.75 -0.8
1,811,007 + DVU1743 0.79 +0.7
1,811,039 + DVU1743 0.86 +0.4
1,811,107 + +0.4
1,811,108 + -0.6
1,811,109 + +0.1
1,811,117 - -0.7
1,811,139 - -2.4
1,811,140 + -0.3
1,811,204 + -0.1
1,811,242 + DVU1744 0.24 +0.2
1,811,242 + DVU1744 0.24 -0.2
1,811,304 + DVU1744 0.50 -0.5
1,811,339 + DVU1744 0.64 -1.2
1,811,356 + DVU1744 0.71 -0.5
1,811,364 - DVU1744 0.74 -0.4
1,811,384 + DVU1744 0.83 +0.8
1,811,499 + -2.0
1,811,499 + -0.8
1,811,506 + +0.4
1,811,506 + -0.1
1,811,596 + DVU1745 0.16 +0.5
1,811,769 - DVU1745 0.50 -0.5
1,811,774 - DVU1745 0.51 -0.6
1,811,802 - DVU1745 0.56 -0.1
1,811,874 - DVU1745 0.70 -0.1
1,811,902 + DVU1745 0.75 -0.7
1,811,907 + DVU1745 0.76 +0.1
1,811,907 + DVU1745 0.76 -0.1
1,811,907 + DVU1745 0.76 -1.6
1,811,915 - DVU1745 0.78 -0.2
1,811,915 - DVU1745 0.78 +0.2
1,811,915 - DVU1745 0.78 +0.0
1,811,915 - DVU1745 0.78 +0.6
1,811,929 + DVU1745 0.80 +0.3
1,811,983 + +0.1
1,811,989 + +0.3
1,811,997 - +1.0
1,812,036 + -0.1
1,812,079 + -0.1
1,812,082 - +0.3
1,812,084 + +0.1

Or see this region's nucleotide sequence