Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1741 and DVU1742 are separated by 469 nucleotides DVU1742 and DVU1743 are separated by 5 nucleotides DVU1743 and DVU1744 are separated by 83 nucleotides DVU1744 and DVU1745 are separated by 84 nucleotides
DVU1741: DVU1741 - hypothetical protein (TIGR), at 1,808,976 to 1,809,947
DVU1741
DVU1742: DVU1742 - prevent-host-death family protein (TIGR), at 1,810,417 to 1,810,656
DVU1742
DVU1743: DVU1743 - hypothetical protein (TIGR), at 1,810,662 to 1,811,099
DVU1743
DVU1744: DVU1744 - DNA-binding protein (TIGR), at 1,811,183 to 1,811,425
DVU1744
DVU1745: DVU1745 - DNA-binding protein (TIGR), at 1,811,510 to 1,812,031
DVU1745
Position (kb)
1810
1811
1812 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1809.682 kb on - strand, within DVU1741 at 1809.697 kb on - strand, within DVU1741 at 1809.697 kb on - strand, within DVU1741 at 1809.725 kb on - strand, within DVU1741 at 1809.730 kb on - strand, within DVU1741 at 1809.730 kb on - strand, within DVU1741 at 1809.775 kb on + strand, within DVU1741 at 1809.822 kb on + strand, within DVU1741 at 1809.856 kb on + strand at 1809.891 kb on - strand at 1809.957 kb on - strand at 1809.972 kb on - strand at 1810.241 kb on + strand at 1810.283 kb on - strand at 1810.283 kb on - strand at 1810.292 kb on + strand at 1810.372 kb on - strand at 1810.465 kb on + strand, within DVU1742 at 1810.557 kb on - strand, within DVU1742 at 1810.591 kb on + strand, within DVU1742 at 1810.601 kb on + strand, within DVU1742 at 1810.608 kb on + strand, within DVU1742 at 1810.637 kb on - strand at 1810.645 kb on + strand at 1810.712 kb on - strand, within DVU1743 at 1810.712 kb on - strand, within DVU1743 at 1810.775 kb on - strand, within DVU1743 at 1810.864 kb on + strand, within DVU1743 at 1810.872 kb on - strand, within DVU1743 at 1810.992 kb on + strand, within DVU1743 at 1810.992 kb on + strand, within DVU1743 at 1811.007 kb on + strand, within DVU1743 at 1811.039 kb on + strand, within DVU1743 at 1811.107 kb on + strand at 1811.108 kb on + strand at 1811.109 kb on + strand at 1811.117 kb on - strand at 1811.139 kb on - strand at 1811.140 kb on + strand at 1811.204 kb on + strand at 1811.242 kb on + strand, within DVU1744 at 1811.242 kb on + strand, within DVU1744 at 1811.304 kb on + strand, within DVU1744 at 1811.339 kb on + strand, within DVU1744 at 1811.356 kb on + strand, within DVU1744 at 1811.364 kb on - strand, within DVU1744 at 1811.384 kb on + strand, within DVU1744 at 1811.499 kb on + strand at 1811.499 kb on + strand at 1811.506 kb on + strand at 1811.506 kb on + strand at 1811.596 kb on + strand, within DVU1745 at 1811.769 kb on - strand, within DVU1745 at 1811.774 kb on - strand, within DVU1745 at 1811.802 kb on - strand, within DVU1745 at 1811.874 kb on - strand, within DVU1745 at 1811.902 kb on + strand, within DVU1745 at 1811.907 kb on + strand, within DVU1745 at 1811.907 kb on + strand, within DVU1745 at 1811.907 kb on + strand, within DVU1745 at 1811.915 kb on - strand, within DVU1745 at 1811.915 kb on - strand, within DVU1745 at 1811.915 kb on - strand, within DVU1745 at 1811.915 kb on - strand, within DVU1745 at 1811.929 kb on + strand, within DVU1745 at 1811.983 kb on + strand at 1811.989 kb on + strand at 1811.997 kb on - strand at 1812.036 kb on + strand at 1812.079 kb on + strand at 1812.082 kb on - strand at 1812.084 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,809,682 - DVU1741 0.73 +0.2 1,809,697 - DVU1741 0.74 -1.3 1,809,697 - DVU1741 0.74 -1.3 1,809,725 - DVU1741 0.77 -0.0 1,809,730 - DVU1741 0.78 +0.5 1,809,730 - DVU1741 0.78 +0.2 1,809,775 + DVU1741 0.82 +0.5 1,809,822 + DVU1741 0.87 -0.1 1,809,856 + -1.4 1,809,891 - -0.5 1,809,957 - -0.4 1,809,972 - -2.0 1,810,241 + -0.3 1,810,283 - -0.4 1,810,283 - -1.5 1,810,292 + -0.1 1,810,372 - -1.3 1,810,465 + DVU1742 0.20 -0.3 1,810,557 - DVU1742 0.58 -0.8 1,810,591 + DVU1742 0.72 -1.0 1,810,601 + DVU1742 0.77 +0.4 1,810,608 + DVU1742 0.80 -0.3 1,810,637 - -2.2 1,810,645 + -0.2 1,810,712 - DVU1743 0.11 -2.4 1,810,712 - DVU1743 0.11 -1.0 1,810,775 - DVU1743 0.26 -0.6 1,810,864 + DVU1743 0.46 -0.2 1,810,872 - DVU1743 0.48 -3.4 1,810,992 + DVU1743 0.75 -1.5 1,810,992 + DVU1743 0.75 -0.8 1,811,007 + DVU1743 0.79 +0.7 1,811,039 + DVU1743 0.86 +0.4 1,811,107 + +0.4 1,811,108 + -0.6 1,811,109 + +0.1 1,811,117 - -0.7 1,811,139 - -2.4 1,811,140 + -0.3 1,811,204 + -0.1 1,811,242 + DVU1744 0.24 +0.2 1,811,242 + DVU1744 0.24 -0.2 1,811,304 + DVU1744 0.50 -0.5 1,811,339 + DVU1744 0.64 -1.2 1,811,356 + DVU1744 0.71 -0.5 1,811,364 - DVU1744 0.74 -0.4 1,811,384 + DVU1744 0.83 +0.8 1,811,499 + -2.0 1,811,499 + -0.8 1,811,506 + +0.4 1,811,506 + -0.1 1,811,596 + DVU1745 0.16 +0.5 1,811,769 - DVU1745 0.50 -0.5 1,811,774 - DVU1745 0.51 -0.6 1,811,802 - DVU1745 0.56 -0.1 1,811,874 - DVU1745 0.70 -0.1 1,811,902 + DVU1745 0.75 -0.7 1,811,907 + DVU1745 0.76 +0.1 1,811,907 + DVU1745 0.76 -0.1 1,811,907 + DVU1745 0.76 -1.6 1,811,915 - DVU1745 0.78 -0.2 1,811,915 - DVU1745 0.78 +0.2 1,811,915 - DVU1745 0.78 +0.0 1,811,915 - DVU1745 0.78 +0.6 1,811,929 + DVU1745 0.80 +0.3 1,811,983 + +0.1 1,811,989 + +0.3 1,811,997 - +1.0 1,812,036 + -0.1 1,812,079 + -0.1 1,812,082 - +0.3 1,812,084 + +0.1
Or see this region's nucleotide sequence