Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1653

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1650 and DVU1651 are separated by 14 nucleotidesDVU1651 and hit are separated by 10 nucleotideshit and DVU1653 are separated by 62 nucleotidesDVU1653 and xerD overlap by 4 nucleotides DVU1650: DVU1650 - conserved hypothetical protein (TIGR), at 1,730,618 to 1,731,742 DVU1650 DVU1651: DVU1651 - conserved hypothetical protein (TIGR), at 1,731,757 to 1,732,128 DVU1651 DVU1652: hit - HIT family protein (TIGR), at 1,732,139 to 1,732,663 hit DVU1653: DVU1653 - polyA polymerase family protein (TIGR), at 1,732,726 to 1,735,440 DVU1653 DVU1654: xerD - site-specific recombinase, phage integrase family (TIGR), at 1,735,437 to 1,736,321 xerD Position (kb) 1732 1733 1734 1735 1736Strain fitness (log2 ratio) -2 -1 0 1at 1731.775 kb on - strandat 1731.882 kb on - strand, within DVU1651at 1731.931 kb on - strand, within DVU1651at 1731.951 kb on + strand, within DVU1651at 1732.174 kb on - strandat 1732.177 kb on + strandat 1732.414 kb on + strand, within hitat 1732.518 kb on + strand, within hitat 1732.523 kb on + strand, within hitat 1732.526 kb on - strand, within hitat 1732.526 kb on - strand, within hitat 1732.723 kb on + strandat 1732.731 kb on - strandat 1732.731 kb on - strandat 1732.731 kb on - strandat 1732.731 kb on - strandat 1732.785 kb on + strandat 1732.791 kb on - strandat 1732.800 kb on - strandat 1732.800 kb on - strandat 1732.873 kb on + strandat 1733.130 kb on - strand, within DVU1653at 1734.142 kb on - strand, within DVU1653at 1734.556 kb on - strand, within DVU1653at 1734.556 kb on - strand, within DVU1653at 1735.043 kb on - strand, within DVU1653at 1735.057 kb on - strand, within DVU1653at 1735.064 kb on + strand, within DVU1653at 1735.074 kb on - strand, within DVU1653at 1735.082 kb on - strand, within DVU1653at 1735.329 kb on - strandat 1735.405 kb on - strandat 1735.415 kb on - strandat 1735.503 kb on - strandat 1735.581 kb on + strand, within xerDat 1735.617 kb on + strand, within xerDat 1735.656 kb on - strand, within xerDat 1735.665 kb on + strand, within xerDat 1735.674 kb on + strand, within xerDat 1735.730 kb on - strand, within xerDat 1735.789 kb on - strand, within xerDat 1735.897 kb on - strand, within xerDat 1735.964 kb on + strand, within xerDat 1736.148 kb on - strand, within xerDat 1736.246 kb on + strandat 1736.274 kb on - strandat 1736.290 kb on - strandat 1736.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,731,775 - -0.2
1,731,882 - DVU1651 0.34 -0.4
1,731,931 - DVU1651 0.47 -1.8
1,731,951 + DVU1651 0.52 +0.3
1,732,174 - +1.1
1,732,177 + +0.4
1,732,414 + hit DVU1652 0.52 +0.3
1,732,518 + hit DVU1652 0.72 +0.4
1,732,523 + hit DVU1652 0.73 +0.3
1,732,526 - hit DVU1652 0.74 +0.9
1,732,526 - hit DVU1652 0.74 +0.3
1,732,723 + +0.4
1,732,731 - -0.9
1,732,731 - -0.8
1,732,731 - +0.1
1,732,731 - -0.5
1,732,785 + -0.3
1,732,791 - -0.6
1,732,800 - -0.5
1,732,800 - -0.4
1,732,873 + +0.4
1,733,130 - DVU1653 0.15 -0.5
1,734,142 - DVU1653 0.52 +1.0
1,734,556 - DVU1653 0.67 -0.3
1,734,556 - DVU1653 0.67 -0.5
1,735,043 - DVU1653 0.85 +0.2
1,735,057 - DVU1653 0.86 -1.6
1,735,064 + DVU1653 0.86 -1.3
1,735,074 - DVU1653 0.86 -2.1
1,735,082 - DVU1653 0.87 -0.9
1,735,329 - -2.1
1,735,405 - -0.6
1,735,415 - +0.4
1,735,503 - +0.4
1,735,581 + xerD DVU1654 0.16 -0.7
1,735,617 + xerD DVU1654 0.20 +0.0
1,735,656 - xerD DVU1654 0.25 -0.4
1,735,665 + xerD DVU1654 0.26 -1.7
1,735,674 + xerD DVU1654 0.27 -0.1
1,735,730 - xerD DVU1654 0.33 -0.9
1,735,789 - xerD DVU1654 0.40 -0.4
1,735,897 - xerD DVU1654 0.52 -0.5
1,735,964 + xerD DVU1654 0.60 +0.1
1,736,148 - xerD DVU1654 0.80 -0.9
1,736,246 + -0.5
1,736,274 - -1.5
1,736,290 - -0.9
1,736,373 - +0.1

Or see this region's nucleotide sequence