Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1650 and DVU1651 are separated by 14 nucleotides DVU1651 and hit are separated by 10 nucleotides hit and DVU1653 are separated by 62 nucleotides DVU1653 and xerD overlap by 4 nucleotides
DVU1650: DVU1650 - conserved hypothetical protein (TIGR), at 1,730,618 to 1,731,742
DVU1650
DVU1651: DVU1651 - conserved hypothetical protein (TIGR), at 1,731,757 to 1,732,128
DVU1651
DVU1652: hit - HIT family protein (TIGR), at 1,732,139 to 1,732,663
hit
DVU1653: DVU1653 - polyA polymerase family protein (TIGR), at 1,732,726 to 1,735,440
DVU1653
DVU1654: xerD - site-specific recombinase, phage integrase family (TIGR), at 1,735,437 to 1,736,321
xerD
Position (kb)
1732
1733
1734
1735
1736 Strain fitness (log2 ratio)
-2
-1
0
1 at 1731.775 kb on - strand at 1731.882 kb on - strand, within DVU1651 at 1731.931 kb on - strand, within DVU1651 at 1731.951 kb on + strand, within DVU1651 at 1732.174 kb on - strand at 1732.177 kb on + strand at 1732.414 kb on + strand, within hit at 1732.518 kb on + strand, within hit at 1732.523 kb on + strand, within hit at 1732.526 kb on - strand, within hit at 1732.526 kb on - strand, within hit at 1732.723 kb on + strand at 1732.731 kb on - strand at 1732.731 kb on - strand at 1732.731 kb on - strand at 1732.731 kb on - strand at 1732.785 kb on + strand at 1732.791 kb on - strand at 1732.800 kb on - strand at 1732.800 kb on - strand at 1732.873 kb on + strand at 1733.130 kb on - strand, within DVU1653 at 1734.142 kb on - strand, within DVU1653 at 1734.556 kb on - strand, within DVU1653 at 1734.556 kb on - strand, within DVU1653 at 1735.043 kb on - strand, within DVU1653 at 1735.057 kb on - strand, within DVU1653 at 1735.064 kb on + strand, within DVU1653 at 1735.074 kb on - strand, within DVU1653 at 1735.082 kb on - strand, within DVU1653 at 1735.329 kb on - strand at 1735.405 kb on - strand at 1735.415 kb on - strand at 1735.503 kb on - strand at 1735.581 kb on + strand, within xerD at 1735.617 kb on + strand, within xerD at 1735.656 kb on - strand, within xerD at 1735.665 kb on + strand, within xerD at 1735.674 kb on + strand, within xerD at 1735.730 kb on - strand, within xerD at 1735.789 kb on - strand, within xerD at 1735.897 kb on - strand, within xerD at 1735.964 kb on + strand, within xerD at 1736.148 kb on - strand, within xerD at 1736.246 kb on + strand at 1736.274 kb on - strand at 1736.290 kb on - strand at 1736.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,731,775 - -0.2 1,731,882 - DVU1651 0.34 -0.4 1,731,931 - DVU1651 0.47 -1.8 1,731,951 + DVU1651 0.52 +0.3 1,732,174 - +1.1 1,732,177 + +0.4 1,732,414 + hit DVU1652 0.52 +0.3 1,732,518 + hit DVU1652 0.72 +0.4 1,732,523 + hit DVU1652 0.73 +0.3 1,732,526 - hit DVU1652 0.74 +0.9 1,732,526 - hit DVU1652 0.74 +0.3 1,732,723 + +0.4 1,732,731 - -0.9 1,732,731 - -0.8 1,732,731 - +0.1 1,732,731 - -0.5 1,732,785 + -0.3 1,732,791 - -0.6 1,732,800 - -0.5 1,732,800 - -0.4 1,732,873 + +0.4 1,733,130 - DVU1653 0.15 -0.5 1,734,142 - DVU1653 0.52 +1.0 1,734,556 - DVU1653 0.67 -0.3 1,734,556 - DVU1653 0.67 -0.5 1,735,043 - DVU1653 0.85 +0.2 1,735,057 - DVU1653 0.86 -1.6 1,735,064 + DVU1653 0.86 -1.3 1,735,074 - DVU1653 0.86 -2.1 1,735,082 - DVU1653 0.87 -0.9 1,735,329 - -2.1 1,735,405 - -0.6 1,735,415 - +0.4 1,735,503 - +0.4 1,735,581 + xerD DVU1654 0.16 -0.7 1,735,617 + xerD DVU1654 0.20 +0.0 1,735,656 - xerD DVU1654 0.25 -0.4 1,735,665 + xerD DVU1654 0.26 -1.7 1,735,674 + xerD DVU1654 0.27 -0.1 1,735,730 - xerD DVU1654 0.33 -0.9 1,735,789 - xerD DVU1654 0.40 -0.4 1,735,897 - xerD DVU1654 0.52 -0.5 1,735,964 + xerD DVU1654 0.60 +0.1 1,736,148 - xerD DVU1654 0.80 -0.9 1,736,246 + -0.5 1,736,274 - -1.5 1,736,290 - -0.9 1,736,373 - +0.1
Or see this region's nucleotide sequence