Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1586

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1585 and ccmG are separated by 26 nucleotidesccmG and DVU1587 overlap by 1 nucleotidesDVU1587 and hpt are separated by 80 nucleotides DVU1585: DVU1585 - Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) (from data), at 1,667,483 to 1,669,897 DVU1585 DVU1586: ccmG - thioredoxin family protein (TIGR), at 1,669,924 to 1,670,391 ccmG DVU1587: DVU1587 - N-acetylglutamate synthase (EC 2.3.1.1) (from data), at 1,670,391 to 1,670,855 DVU1587 DVU1588: hpt - hypoxanthine phosphoribosyltransferase (TIGR), at 1,670,936 to 1,671,466 hpt Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1668.951 kb on - strand, within DVU1585at 1668.951 kb on - strand, within DVU1585at 1669.016 kb on + strand, within DVU1585at 1669.024 kb on - strand, within DVU1585at 1669.044 kb on + strand, within DVU1585at 1669.099 kb on - strand, within DVU1585at 1669.099 kb on - strand, within DVU1585at 1669.114 kb on + strand, within DVU1585at 1669.235 kb on + strand, within DVU1585at 1669.248 kb on + strand, within DVU1585at 1669.295 kb on + strand, within DVU1585at 1669.319 kb on - strand, within DVU1585at 1669.353 kb on + strand, within DVU1585at 1669.363 kb on + strand, within DVU1585at 1669.376 kb on - strand, within DVU1585at 1669.378 kb on + strand, within DVU1585at 1669.410 kb on + strand, within DVU1585at 1669.918 kb on + strandat 1669.974 kb on - strand, within ccmGat 1669.974 kb on - strand, within ccmGat 1670.079 kb on - strand, within ccmGat 1670.098 kb on - strand, within ccmGat 1670.130 kb on + strand, within ccmGat 1670.212 kb on + strand, within ccmGat 1670.443 kb on - strand, within DVU1587at 1670.456 kb on - strand, within DVU1587at 1670.480 kb on + strand, within DVU1587at 1670.563 kb on + strand, within DVU1587at 1670.571 kb on - strand, within DVU1587at 1670.634 kb on + strand, within DVU1587at 1670.653 kb on + strand, within DVU1587at 1670.783 kb on + strand, within DVU1587at 1670.783 kb on + strand, within DVU1587at 1670.784 kb on - strand, within DVU1587at 1670.852 kb on + strandat 1670.917 kb on + strandat 1670.950 kb on + strandat 1670.950 kb on + strandat 1670.958 kb on - strandat 1670.958 kb on - strandat 1670.975 kb on - strandat 1671.037 kb on - strand, within hptat 1671.259 kb on - strand, within hpt

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,668,951 - DVU1585 0.61 -1.5
1,668,951 - DVU1585 0.61 -0.4
1,669,016 + DVU1585 0.63 -1.3
1,669,024 - DVU1585 0.64 -2.1
1,669,044 + DVU1585 0.65 -0.2
1,669,099 - DVU1585 0.67 -0.2
1,669,099 - DVU1585 0.67 +0.5
1,669,114 + DVU1585 0.68 -2.0
1,669,235 + DVU1585 0.73 -0.6
1,669,248 + DVU1585 0.73 +0.3
1,669,295 + DVU1585 0.75 -0.1
1,669,319 - DVU1585 0.76 +0.5
1,669,353 + DVU1585 0.77 -0.6
1,669,363 + DVU1585 0.78 +0.5
1,669,376 - DVU1585 0.78 -0.1
1,669,378 + DVU1585 0.78 -0.8
1,669,410 + DVU1585 0.80 -0.0
1,669,918 + -0.6
1,669,974 - ccmG DVU1586 0.11 -1.0
1,669,974 - ccmG DVU1586 0.11 -2.0
1,670,079 - ccmG DVU1586 0.33 -1.4
1,670,098 - ccmG DVU1586 0.37 -0.5
1,670,130 + ccmG DVU1586 0.44 -0.4
1,670,212 + ccmG DVU1586 0.62 -0.8
1,670,443 - DVU1587 0.11 -1.4
1,670,456 - DVU1587 0.14 -2.9
1,670,480 + DVU1587 0.19 -0.9
1,670,563 + DVU1587 0.37 -2.0
1,670,571 - DVU1587 0.39 -0.8
1,670,634 + DVU1587 0.52 +1.8
1,670,653 + DVU1587 0.56 -1.5
1,670,783 + DVU1587 0.84 -0.5
1,670,783 + DVU1587 0.84 -1.8
1,670,784 - DVU1587 0.85 -1.7
1,670,852 + -2.1
1,670,917 + -0.1
1,670,950 + -0.4
1,670,950 + -2.9
1,670,958 - -0.1
1,670,958 - +0.3
1,670,975 - +0.2
1,671,037 - hpt DVU1588 0.19 +0.0
1,671,259 - hpt DVU1588 0.61 -0.0

Or see this region's nucleotide sequence