Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1466

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1465 and argB are separated by 106 nucleotidesargB and hslU are separated by 15 nucleotides DVU1465: DVU1465 - CgeB family protein (TIGR), at 1,544,267 to 1,545,595 DVU1465 DVU1466: argB - acetylglutamate kinase (TIGR), at 1,545,702 to 1,546,628 argB DVU1467: hslU - heat shock protein HslVU, ATPase subunit HslU (TIGR), at 1,546,644 to 1,547,969 hslU Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1544.944 kb on + strand, within DVU1465at 1544.952 kb on - strand, within DVU1465at 1544.952 kb on - strand, within DVU1465at 1544.958 kb on + strand, within DVU1465at 1544.990 kb on - strand, within DVU1465at 1544.992 kb on + strand, within DVU1465at 1545.012 kb on + strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.064 kb on + strand, within DVU1465at 1545.088 kb on - strand, within DVU1465at 1545.123 kb on + strand, within DVU1465at 1545.123 kb on + strand, within DVU1465at 1545.131 kb on - strand, within DVU1465at 1545.185 kb on - strand, within DVU1465at 1545.258 kb on - strand, within DVU1465at 1545.420 kb on + strand, within DVU1465at 1545.458 kb on + strand, within DVU1465at 1545.466 kb on - strandat 1545.590 kb on + strandat 1545.698 kb on - strandat 1545.717 kb on + strandat 1545.731 kb on + strandat 1545.842 kb on + strand, within argBat 1545.859 kb on - strand, within argBat 1546.186 kb on + strand, within argBat 1546.360 kb on - strand, within argBat 1546.370 kb on - strand, within argBat 1546.485 kb on + strand, within argBat 1546.600 kb on - strandat 1546.631 kb on - strandat 1546.665 kb on + strandat 1546.684 kb on + strandat 1546.840 kb on - strand, within hslUat 1546.875 kb on + strand, within hslUat 1546.883 kb on - strand, within hslUat 1546.951 kb on + strand, within hslUat 1547.033 kb on - strand, within hslUat 1547.070 kb on + strand, within hslUat 1547.163 kb on - strand, within hslUat 1547.183 kb on - strand, within hslUat 1547.220 kb on + strand, within hslUat 1547.263 kb on + strand, within hslUat 1547.271 kb on - strand, within hslUat 1547.284 kb on + strand, within hslUat 1547.292 kb on - strand, within hslUat 1547.310 kb on + strand, within hslUat 1547.318 kb on - strand, within hslUat 1547.335 kb on - strand, within hslUat 1547.400 kb on - strand, within hslUat 1547.546 kb on + strand, within hslUat 1547.604 kb on - strand, within hslUat 1547.627 kb on - strand, within hslU

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,544,944 + DVU1465 0.51 +0.7
1,544,952 - DVU1465 0.52 +0.5
1,544,952 - DVU1465 0.52 +0.6
1,544,958 + DVU1465 0.52 -2.6
1,544,990 - DVU1465 0.54 +0.8
1,544,992 + DVU1465 0.55 +0.9
1,545,012 + DVU1465 0.56 +0.7
1,545,020 - DVU1465 0.57 -0.5
1,545,020 - DVU1465 0.57 +0.8
1,545,020 - DVU1465 0.57 +1.4
1,545,064 + DVU1465 0.60 +1.1
1,545,088 - DVU1465 0.62 +0.5
1,545,123 + DVU1465 0.64 +0.2
1,545,123 + DVU1465 0.64 +0.3
1,545,131 - DVU1465 0.65 +0.8
1,545,185 - DVU1465 0.69 +0.5
1,545,258 - DVU1465 0.75 +0.4
1,545,420 + DVU1465 0.87 +0.8
1,545,458 + DVU1465 0.90 +0.3
1,545,466 - +0.8
1,545,590 + +0.1
1,545,698 - -0.5
1,545,717 + -0.2
1,545,731 + +0.1
1,545,842 + argB DVU1466 0.15 -3.9
1,545,859 - argB DVU1466 0.17 -1.6
1,546,186 + argB DVU1466 0.52 -3.6
1,546,360 - argB DVU1466 0.71 -2.5
1,546,370 - argB DVU1466 0.72 -0.9
1,546,485 + argB DVU1466 0.84 -3.9
1,546,600 - -3.7
1,546,631 - -3.9
1,546,665 + -0.1
1,546,684 + -1.6
1,546,840 - hslU DVU1467 0.15 +0.0
1,546,875 + hslU DVU1467 0.17 +0.3
1,546,883 - hslU DVU1467 0.18 -0.3
1,546,951 + hslU DVU1467 0.23 +0.6
1,547,033 - hslU DVU1467 0.29 -0.7
1,547,070 + hslU DVU1467 0.32 +0.4
1,547,163 - hslU DVU1467 0.39 -0.2
1,547,183 - hslU DVU1467 0.41 +0.3
1,547,220 + hslU DVU1467 0.43 -0.1
1,547,263 + hslU DVU1467 0.47 +0.0
1,547,271 - hslU DVU1467 0.47 -0.9
1,547,284 + hslU DVU1467 0.48 +1.5
1,547,292 - hslU DVU1467 0.49 +0.1
1,547,310 + hslU DVU1467 0.50 -0.4
1,547,318 - hslU DVU1467 0.51 -2.0
1,547,335 - hslU DVU1467 0.52 +0.0
1,547,400 - hslU DVU1467 0.57 -1.3
1,547,546 + hslU DVU1467 0.68 +1.7
1,547,604 - hslU DVU1467 0.72 +0.3
1,547,627 - hslU DVU1467 0.74 +0.8

Or see this region's nucleotide sequence