Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1462

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemA and DVU1462 are separated by 1 nucleotidesDVU1462 and cysG-1 are separated by 85 nucleotidescysG-1 and DVU1464 are separated by 122 nucleotides DVU1461: hemA - glutamyl-tRNA reductase (TIGR), at 1,540,047 to 1,541,369 hemA DVU1462: DVU1462 - cytochrome c assembly protein, putative (TIGR), at 1,541,371 to 1,542,102 DVU1462 DVU1463: cysG-1 - siroheme synthase, N-terminal domain protein (TIGR), at 1,542,188 to 1,542,865 cysG-1 DVU1464: DVU1464 - heptosyltransferase family protein (TIGR), at 1,542,988 to 1,544,223 DVU1464 Position (kb) 1541 1542 1543Strain fitness (log2 ratio) -1 0 1at 1541.570 kb on + strand, within DVU1462at 1541.635 kb on + strand, within DVU1462at 1541.635 kb on + strand, within DVU1462at 1542.152 kb on + strandat 1542.894 kb on + strandat 1542.903 kb on - strandat 1542.957 kb on + strandat 1542.973 kb on + strandat 1542.981 kb on - strandat 1543.052 kb on + strandat 1543.052 kb on + strandat 1543.052 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,541,570 + DVU1462 0.27 -1.6
1,541,635 + DVU1462 0.36 -1.1
1,541,635 + DVU1462 0.36 -0.8
1,542,152 + -0.3
1,542,894 + +0.4
1,542,903 - -1.1
1,542,957 + +0.3
1,542,973 + -0.1
1,542,981 - +0.1
1,543,052 + -0.3
1,543,052 + +0.2
1,543,052 + +0.7

Or see this region's nucleotide sequence