Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1436

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1435 and DVU1436 are separated by 136 nucleotidesDVU1436 and DVU1438 are separated by 264 nucleotides DVU1435: DVU1435 - membrane protein, putative (TIGR), at 1,513,729 to 1,514,913 DVU1435 DVU1436: DVU1436 - hypothetical protein (TIGR), at 1,515,050 to 1,515,145 DVU1436 DVU1438: DVU1438 - cobyrinic acid a,c-diamide synthase family protein (TIGR), at 1,515,410 to 1,516,474 DVU1438 Position (kb) 1515 1516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1514.051 kb on - strand, within DVU1435at 1514.095 kb on - strand, within DVU1435at 1514.275 kb on + strand, within DVU1435at 1514.285 kb on - strand, within DVU1435at 1514.287 kb on + strand, within DVU1435at 1514.295 kb on - strand, within DVU1435at 1514.355 kb on + strand, within DVU1435at 1514.366 kb on + strand, within DVU1435at 1514.366 kb on + strand, within DVU1435at 1514.366 kb on + strand, within DVU1435at 1514.376 kb on + strand, within DVU1435at 1514.425 kb on - strand, within DVU1435at 1514.498 kb on + strand, within DVU1435at 1514.543 kb on - strand, within DVU1435at 1514.560 kb on - strand, within DVU1435at 1514.652 kb on + strand, within DVU1435at 1514.652 kb on + strand, within DVU1435at 1514.653 kb on + strand, within DVU1435at 1514.681 kb on + strand, within DVU1435at 1514.798 kb on - strandat 1514.831 kb on + strandat 1514.831 kb on + strandat 1514.984 kb on - strandat 1515.110 kb on - strand, within DVU1436at 1515.134 kb on - strand, within DVU1436at 1515.366 kb on - strandat 1515.606 kb on - strand, within DVU1438at 1515.631 kb on + strand, within DVU1438at 1515.645 kb on - strand, within DVU1438at 1515.794 kb on - strand, within DVU1438at 1515.801 kb on + strand, within DVU1438at 1515.804 kb on - strand, within DVU1438at 1515.841 kb on - strand, within DVU1438at 1515.920 kb on - strand, within DVU1438at 1516.104 kb on - strand, within DVU1438at 1516.106 kb on - strand, within DVU1438

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,514,051 - DVU1435 0.27 -1.0
1,514,095 - DVU1435 0.31 +0.1
1,514,275 + DVU1435 0.46 +0.9
1,514,285 - DVU1435 0.47 -0.1
1,514,287 + DVU1435 0.47 +1.6
1,514,295 - DVU1435 0.48 -2.4
1,514,355 + DVU1435 0.53 -0.0
1,514,366 + DVU1435 0.54 -0.1
1,514,366 + DVU1435 0.54 -0.5
1,514,366 + DVU1435 0.54 -0.1
1,514,376 + DVU1435 0.55 -0.3
1,514,425 - DVU1435 0.59 -0.6
1,514,498 + DVU1435 0.65 +1.8
1,514,543 - DVU1435 0.69 +0.2
1,514,560 - DVU1435 0.70 -0.3
1,514,652 + DVU1435 0.78 +1.1
1,514,652 + DVU1435 0.78 -1.5
1,514,653 + DVU1435 0.78 +0.3
1,514,681 + DVU1435 0.80 -0.1
1,514,798 - -0.1
1,514,831 + +0.4
1,514,831 + -0.3
1,514,984 - -0.6
1,515,110 - DVU1436 0.62 -2.1
1,515,134 - DVU1436 0.88 -0.0
1,515,366 - -0.5
1,515,606 - DVU1438 0.18 -0.7
1,515,631 + DVU1438 0.21 -2.0
1,515,645 - DVU1438 0.22 -2.2
1,515,794 - DVU1438 0.36 -1.2
1,515,801 + DVU1438 0.37 -1.8
1,515,804 - DVU1438 0.37 -1.6
1,515,841 - DVU1438 0.40 -0.8
1,515,920 - DVU1438 0.48 -3.5
1,516,104 - DVU1438 0.65 -0.9
1,516,106 - DVU1438 0.65 +0.6

Or see this region's nucleotide sequence