Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1429

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgm and DVU1429 are separated by 278 nucleotidesDVU1429 and DVU1430 are separated by 413 nucleotides DVU1428: pgm - phosphoglucomutase, alpha-D-glucose phosphate-specific (TIGR), at 1,501,801 to 1,503,456 pgm DVU1429: DVU1429 - GTP-binding protein (TIGR), at 1,503,735 to 1,504,835 DVU1429 DVU1430: DVU1430 - peptidase, M16 family (TIGR), at 1,505,249 to 1,507,855 DVU1430 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -3 -2 -1 0 1at 1502.772 kb on - strand, within pgmat 1502.825 kb on + strand, within pgmat 1502.828 kb on - strand, within pgmat 1502.867 kb on + strand, within pgmat 1502.880 kb on - strand, within pgmat 1502.880 kb on - strand, within pgmat 1502.959 kb on - strand, within pgmat 1503.054 kb on - strand, within pgmat 1503.164 kb on - strand, within pgmat 1503.189 kb on + strand, within pgmat 1503.189 kb on + strand, within pgmat 1503.282 kb on - strand, within pgmat 1503.343 kb on + strandat 1503.359 kb on + strandat 1503.367 kb on - strandat 1503.429 kb on + strandat 1503.707 kb on - strandat 1503.778 kb on + strandat 1503.875 kb on + strand, within DVU1429at 1504.000 kb on - strand, within DVU1429at 1504.244 kb on + strand, within DVU1429at 1504.352 kb on - strand, within DVU1429at 1504.850 kb on - strandat 1504.852 kb on + strandat 1504.987 kb on - strandat 1505.100 kb on - strandat 1505.136 kb on + strandat 1505.203 kb on - strandat 1505.208 kb on - strandat 1505.225 kb on - strandat 1505.226 kb on - strandat 1505.232 kb on + strandat 1505.255 kb on - strandat 1505.315 kb on + strandat 1505.338 kb on - strandat 1505.373 kb on - strandat 1505.491 kb on - strandat 1505.496 kb on - strandat 1505.567 kb on + strand, within DVU1430at 1505.567 kb on + strand, within DVU1430at 1505.584 kb on - strand, within DVU1430at 1505.603 kb on + strand, within DVU1430at 1505.693 kb on - strand, within DVU1430at 1505.701 kb on + strand, within DVU1430at 1505.719 kb on - strand, within DVU1430at 1505.733 kb on - strand, within DVU1430at 1505.776 kb on + strand, within DVU1430at 1505.790 kb on - strand, within DVU1430

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,502,772 - pgm DVU1428 0.59 +0.3
1,502,825 + pgm DVU1428 0.62 +0.2
1,502,828 - pgm DVU1428 0.62 +0.4
1,502,867 + pgm DVU1428 0.64 -1.9
1,502,880 - pgm DVU1428 0.65 +0.5
1,502,880 - pgm DVU1428 0.65 -0.1
1,502,959 - pgm DVU1428 0.70 -0.2
1,503,054 - pgm DVU1428 0.76 -0.0
1,503,164 - pgm DVU1428 0.82 +0.1
1,503,189 + pgm DVU1428 0.84 +1.1
1,503,189 + pgm DVU1428 0.84 +0.3
1,503,282 - pgm DVU1428 0.89 -0.1
1,503,343 + +0.3
1,503,359 + +0.1
1,503,367 - +0.1
1,503,429 + -0.1
1,503,707 - -0.0
1,503,778 + +0.0
1,503,875 + DVU1429 0.13 -1.0
1,504,000 - DVU1429 0.24 -0.0
1,504,244 + DVU1429 0.46 -1.2
1,504,352 - DVU1429 0.56 -0.7
1,504,850 - -0.5
1,504,852 + +0.4
1,504,987 - -0.1
1,505,100 - -0.1
1,505,136 + -0.1
1,505,203 - +1.2
1,505,208 - -0.1
1,505,225 - -0.0
1,505,226 - -0.0
1,505,232 + -0.4
1,505,255 - +0.1
1,505,315 + +0.4
1,505,338 - -1.7
1,505,373 - +0.5
1,505,491 - +0.3
1,505,496 - +0.4
1,505,567 + DVU1430 0.12 +0.3
1,505,567 + DVU1430 0.12 -3.3
1,505,584 - DVU1430 0.13 -0.8
1,505,603 + DVU1430 0.14 -0.2
1,505,693 - DVU1430 0.17 -0.1
1,505,701 + DVU1430 0.17 +0.5
1,505,719 - DVU1430 0.18 -0.0
1,505,733 - DVU1430 0.19 +0.1
1,505,776 + DVU1430 0.20 -0.4
1,505,790 - DVU1430 0.21 +0.2

Or see this region's nucleotide sequence