Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgm and DVU1429 are separated by 278 nucleotides DVU1429 and DVU1430 are separated by 413 nucleotides
DVU1428: pgm - phosphoglucomutase, alpha-D-glucose phosphate-specific (TIGR), at 1,501,801 to 1,503,456
pgm
DVU1429: DVU1429 - GTP-binding protein (TIGR), at 1,503,735 to 1,504,835
DVU1429
DVU1430: DVU1430 - peptidase, M16 family (TIGR), at 1,505,249 to 1,507,855
DVU1430
Position (kb)
1503
1504
1505 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1502.772 kb on - strand, within pgm at 1502.825 kb on + strand, within pgm at 1502.828 kb on - strand, within pgm at 1502.867 kb on + strand, within pgm at 1502.880 kb on - strand, within pgm at 1502.880 kb on - strand, within pgm at 1502.959 kb on - strand, within pgm at 1503.054 kb on - strand, within pgm at 1503.164 kb on - strand, within pgm at 1503.189 kb on + strand, within pgm at 1503.189 kb on + strand, within pgm at 1503.282 kb on - strand, within pgm at 1503.343 kb on + strand at 1503.359 kb on + strand at 1503.367 kb on - strand at 1503.429 kb on + strand at 1503.707 kb on - strand at 1503.778 kb on + strand at 1503.875 kb on + strand, within DVU1429 at 1504.000 kb on - strand, within DVU1429 at 1504.244 kb on + strand, within DVU1429 at 1504.352 kb on - strand, within DVU1429 at 1504.850 kb on - strand at 1504.852 kb on + strand at 1504.987 kb on - strand at 1505.100 kb on - strand at 1505.136 kb on + strand at 1505.203 kb on - strand at 1505.208 kb on - strand at 1505.225 kb on - strand at 1505.226 kb on - strand at 1505.232 kb on + strand at 1505.255 kb on - strand at 1505.315 kb on + strand at 1505.338 kb on - strand at 1505.373 kb on - strand at 1505.491 kb on - strand at 1505.496 kb on - strand at 1505.567 kb on + strand, within DVU1430 at 1505.567 kb on + strand, within DVU1430 at 1505.584 kb on - strand, within DVU1430 at 1505.603 kb on + strand, within DVU1430 at 1505.693 kb on - strand, within DVU1430 at 1505.701 kb on + strand, within DVU1430 at 1505.719 kb on - strand, within DVU1430 at 1505.733 kb on - strand, within DVU1430 at 1505.776 kb on + strand, within DVU1430 at 1505.790 kb on - strand, within DVU1430
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,502,772 - pgm DVU1428 0.59 +0.3 1,502,825 + pgm DVU1428 0.62 +0.2 1,502,828 - pgm DVU1428 0.62 +0.4 1,502,867 + pgm DVU1428 0.64 -1.9 1,502,880 - pgm DVU1428 0.65 +0.5 1,502,880 - pgm DVU1428 0.65 -0.1 1,502,959 - pgm DVU1428 0.70 -0.2 1,503,054 - pgm DVU1428 0.76 -0.0 1,503,164 - pgm DVU1428 0.82 +0.1 1,503,189 + pgm DVU1428 0.84 +1.1 1,503,189 + pgm DVU1428 0.84 +0.3 1,503,282 - pgm DVU1428 0.89 -0.1 1,503,343 + +0.3 1,503,359 + +0.1 1,503,367 - +0.1 1,503,429 + -0.1 1,503,707 - -0.0 1,503,778 + +0.0 1,503,875 + DVU1429 0.13 -1.0 1,504,000 - DVU1429 0.24 -0.0 1,504,244 + DVU1429 0.46 -1.2 1,504,352 - DVU1429 0.56 -0.7 1,504,850 - -0.5 1,504,852 + +0.4 1,504,987 - -0.1 1,505,100 - -0.1 1,505,136 + -0.1 1,505,203 - +1.2 1,505,208 - -0.1 1,505,225 - -0.0 1,505,226 - -0.0 1,505,232 + -0.4 1,505,255 - +0.1 1,505,315 + +0.4 1,505,338 - -1.7 1,505,373 - +0.5 1,505,491 - +0.3 1,505,496 - +0.4 1,505,567 + DVU1430 0.12 +0.3 1,505,567 + DVU1430 0.12 -3.3 1,505,584 - DVU1430 0.13 -0.8 1,505,603 + DVU1430 0.14 -0.2 1,505,693 - DVU1430 0.17 -0.1 1,505,701 + DVU1430 0.17 +0.5 1,505,719 - DVU1430 0.18 -0.0 1,505,733 - DVU1430 0.19 +0.1 1,505,776 + DVU1430 0.20 -0.4 1,505,790 - DVU1430 0.21 +0.2
Or see this region's nucleotide sequence