Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1410 and thiC are separated by 473 nucleotides thiC and DVU1412 are separated by 321 nucleotides
DVU1410: DVU1410 - conserved domain protein (TIGR), at 1,478,673 to 1,479,545
DVU1410
DVU1411: thiC - thiamine biosynthesis protein ThiC (TIGR), at 1,480,019 to 1,481,308
thiC
DVU1412: DVU1412 - D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR), at 1,481,630 to 1,482,610
DVU1412
Position (kb)
1480
1481
1482 Strain fitness (log2 ratio)
-2
-1
0
1 at 1479.030 kb on + strand, within DVU1410 at 1479.038 kb on - strand, within DVU1410 at 1479.038 kb on - strand, within DVU1410 at 1479.043 kb on - strand, within DVU1410 at 1479.069 kb on + strand, within DVU1410 at 1479.069 kb on + strand, within DVU1410 at 1479.072 kb on - strand, within DVU1410 at 1479.447 kb on + strand, within DVU1410 at 1479.455 kb on - strand, within DVU1410 at 1479.455 kb on - strand, within DVU1410 at 1479.592 kb on + strand at 1479.785 kb on + strand at 1479.792 kb on + strand at 1479.817 kb on + strand at 1479.835 kb on + strand at 1479.843 kb on - strand at 1479.896 kb on + strand at 1479.932 kb on - strand at 1480.066 kb on + strand at 1480.122 kb on + strand at 1480.145 kb on - strand at 1480.204 kb on + strand, within thiC at 1480.222 kb on + strand, within thiC at 1480.304 kb on + strand, within thiC at 1480.390 kb on + strand, within thiC at 1480.390 kb on + strand, within thiC at 1480.398 kb on - strand, within thiC at 1480.454 kb on - strand, within thiC at 1480.491 kb on + strand, within thiC at 1480.572 kb on - strand, within thiC at 1480.698 kb on + strand, within thiC at 1480.756 kb on + strand, within thiC at 1480.763 kb on - strand, within thiC at 1480.850 kb on + strand, within thiC at 1480.867 kb on + strand, within thiC at 1481.012 kb on - strand, within thiC at 1481.143 kb on - strand, within thiC at 1481.156 kb on + strand, within thiC at 1481.164 kb on - strand, within thiC at 1481.164 kb on - strand, within thiC at 1481.164 kb on - strand, within thiC at 1481.202 kb on + strand at 1481.247 kb on - strand at 1481.270 kb on + strand at 1481.310 kb on - strand at 1481.310 kb on - strand at 1481.471 kb on + strand at 1481.545 kb on + strand at 1481.677 kb on - strand at 1481.716 kb on + strand at 1481.722 kb on - strand at 1481.745 kb on + strand, within DVU1412 at 1481.907 kb on + strand, within DVU1412 at 1481.917 kb on - strand, within DVU1412 at 1481.965 kb on - strand, within DVU1412 at 1481.990 kb on + strand, within DVU1412 at 1482.012 kb on + strand, within DVU1412 at 1482.014 kb on + strand, within DVU1412 at 1482.202 kb on - strand, within DVU1412 at 1482.256 kb on + strand, within DVU1412
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,479,030 + DVU1410 0.41 -0.2 1,479,038 - DVU1410 0.42 +0.7 1,479,038 - DVU1410 0.42 -0.4 1,479,043 - DVU1410 0.42 -1.0 1,479,069 + DVU1410 0.45 -2.0 1,479,069 + DVU1410 0.45 -0.1 1,479,072 - DVU1410 0.46 -0.4 1,479,447 + DVU1410 0.89 -0.2 1,479,455 - DVU1410 0.90 +0.1 1,479,455 - DVU1410 0.90 -1.6 1,479,592 + -0.2 1,479,785 + +0.7 1,479,792 + -0.0 1,479,817 + -0.3 1,479,835 + -0.1 1,479,843 - +0.1 1,479,896 + +0.1 1,479,932 - -0.1 1,480,066 + -1.9 1,480,122 + -1.2 1,480,145 - -1.2 1,480,204 + thiC DVU1411 0.14 -1.5 1,480,222 + thiC DVU1411 0.16 -1.4 1,480,304 + thiC DVU1411 0.22 -1.6 1,480,390 + thiC DVU1411 0.29 -0.9 1,480,390 + thiC DVU1411 0.29 -1.5 1,480,398 - thiC DVU1411 0.29 -2.2 1,480,454 - thiC DVU1411 0.34 -1.0 1,480,491 + thiC DVU1411 0.37 -0.9 1,480,572 - thiC DVU1411 0.43 -1.5 1,480,698 + thiC DVU1411 0.53 -2.7 1,480,756 + thiC DVU1411 0.57 -2.3 1,480,763 - thiC DVU1411 0.58 -1.1 1,480,850 + thiC DVU1411 0.64 -1.9 1,480,867 + thiC DVU1411 0.66 -0.9 1,481,012 - thiC DVU1411 0.77 +0.2 1,481,143 - thiC DVU1411 0.87 -1.1 1,481,156 + thiC DVU1411 0.88 -0.6 1,481,164 - thiC DVU1411 0.89 -1.8 1,481,164 - thiC DVU1411 0.89 -1.6 1,481,164 - thiC DVU1411 0.89 -1.3 1,481,202 + -1.2 1,481,247 - -1.4 1,481,270 + -1.3 1,481,310 - +0.1 1,481,310 - -2.5 1,481,471 + +0.4 1,481,545 + -0.1 1,481,677 - +0.3 1,481,716 + -0.2 1,481,722 - -0.0 1,481,745 + DVU1412 0.12 -0.1 1,481,907 + DVU1412 0.28 -0.3 1,481,917 - DVU1412 0.29 -0.3 1,481,965 - DVU1412 0.34 -0.6 1,481,990 + DVU1412 0.37 -0.2 1,482,012 + DVU1412 0.39 -0.7 1,482,014 + DVU1412 0.39 -0.1 1,482,202 - DVU1412 0.58 -0.2 1,482,256 + DVU1412 0.64 -0.0
Or see this region's nucleotide sequence