Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1411

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1410 and thiC are separated by 473 nucleotidesthiC and DVU1412 are separated by 321 nucleotides DVU1410: DVU1410 - conserved domain protein (TIGR), at 1,478,673 to 1,479,545 DVU1410 DVU1411: thiC - thiamine biosynthesis protein ThiC (TIGR), at 1,480,019 to 1,481,308 thiC DVU1412: DVU1412 - D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR), at 1,481,630 to 1,482,610 DVU1412 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -2 -1 0 1at 1479.030 kb on + strand, within DVU1410at 1479.038 kb on - strand, within DVU1410at 1479.038 kb on - strand, within DVU1410at 1479.043 kb on - strand, within DVU1410at 1479.069 kb on + strand, within DVU1410at 1479.069 kb on + strand, within DVU1410at 1479.072 kb on - strand, within DVU1410at 1479.447 kb on + strand, within DVU1410at 1479.455 kb on - strand, within DVU1410at 1479.455 kb on - strand, within DVU1410at 1479.592 kb on + strandat 1479.785 kb on + strandat 1479.792 kb on + strandat 1479.817 kb on + strandat 1479.835 kb on + strandat 1479.843 kb on - strandat 1479.896 kb on + strandat 1479.932 kb on - strandat 1480.066 kb on + strandat 1480.122 kb on + strandat 1480.145 kb on - strandat 1480.204 kb on + strand, within thiCat 1480.222 kb on + strand, within thiCat 1480.304 kb on + strand, within thiCat 1480.390 kb on + strand, within thiCat 1480.390 kb on + strand, within thiCat 1480.398 kb on - strand, within thiCat 1480.454 kb on - strand, within thiCat 1480.491 kb on + strand, within thiCat 1480.572 kb on - strand, within thiCat 1480.698 kb on + strand, within thiCat 1480.756 kb on + strand, within thiCat 1480.763 kb on - strand, within thiCat 1480.850 kb on + strand, within thiCat 1480.867 kb on + strand, within thiCat 1481.012 kb on - strand, within thiCat 1481.143 kb on - strand, within thiCat 1481.156 kb on + strand, within thiCat 1481.164 kb on - strand, within thiCat 1481.164 kb on - strand, within thiCat 1481.164 kb on - strand, within thiCat 1481.202 kb on + strandat 1481.247 kb on - strandat 1481.270 kb on + strandat 1481.310 kb on - strandat 1481.310 kb on - strandat 1481.471 kb on + strandat 1481.545 kb on + strandat 1481.677 kb on - strandat 1481.716 kb on + strandat 1481.722 kb on - strandat 1481.745 kb on + strand, within DVU1412at 1481.907 kb on + strand, within DVU1412at 1481.917 kb on - strand, within DVU1412at 1481.965 kb on - strand, within DVU1412at 1481.990 kb on + strand, within DVU1412at 1482.012 kb on + strand, within DVU1412at 1482.014 kb on + strand, within DVU1412at 1482.202 kb on - strand, within DVU1412at 1482.256 kb on + strand, within DVU1412

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,479,030 + DVU1410 0.41 -0.2
1,479,038 - DVU1410 0.42 +0.7
1,479,038 - DVU1410 0.42 -0.4
1,479,043 - DVU1410 0.42 -1.0
1,479,069 + DVU1410 0.45 -2.0
1,479,069 + DVU1410 0.45 -0.1
1,479,072 - DVU1410 0.46 -0.4
1,479,447 + DVU1410 0.89 -0.2
1,479,455 - DVU1410 0.90 +0.1
1,479,455 - DVU1410 0.90 -1.6
1,479,592 + -0.2
1,479,785 + +0.7
1,479,792 + -0.0
1,479,817 + -0.3
1,479,835 + -0.1
1,479,843 - +0.1
1,479,896 + +0.1
1,479,932 - -0.1
1,480,066 + -1.9
1,480,122 + -1.2
1,480,145 - -1.2
1,480,204 + thiC DVU1411 0.14 -1.5
1,480,222 + thiC DVU1411 0.16 -1.4
1,480,304 + thiC DVU1411 0.22 -1.6
1,480,390 + thiC DVU1411 0.29 -0.9
1,480,390 + thiC DVU1411 0.29 -1.5
1,480,398 - thiC DVU1411 0.29 -2.2
1,480,454 - thiC DVU1411 0.34 -1.0
1,480,491 + thiC DVU1411 0.37 -0.9
1,480,572 - thiC DVU1411 0.43 -1.5
1,480,698 + thiC DVU1411 0.53 -2.7
1,480,756 + thiC DVU1411 0.57 -2.3
1,480,763 - thiC DVU1411 0.58 -1.1
1,480,850 + thiC DVU1411 0.64 -1.9
1,480,867 + thiC DVU1411 0.66 -0.9
1,481,012 - thiC DVU1411 0.77 +0.2
1,481,143 - thiC DVU1411 0.87 -1.1
1,481,156 + thiC DVU1411 0.88 -0.6
1,481,164 - thiC DVU1411 0.89 -1.8
1,481,164 - thiC DVU1411 0.89 -1.6
1,481,164 - thiC DVU1411 0.89 -1.3
1,481,202 + -1.2
1,481,247 - -1.4
1,481,270 + -1.3
1,481,310 - +0.1
1,481,310 - -2.5
1,481,471 + +0.4
1,481,545 + -0.1
1,481,677 - +0.3
1,481,716 + -0.2
1,481,722 - -0.0
1,481,745 + DVU1412 0.12 -0.1
1,481,907 + DVU1412 0.28 -0.3
1,481,917 - DVU1412 0.29 -0.3
1,481,965 - DVU1412 0.34 -0.6
1,481,990 + DVU1412 0.37 -0.2
1,482,012 + DVU1412 0.39 -0.7
1,482,014 + DVU1412 0.39 -0.1
1,482,202 - DVU1412 0.58 -0.2
1,482,256 + DVU1412 0.64 -0.0

Or see this region's nucleotide sequence