Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1392 and DVU1393 are separated by 86 nucleotides DVU1393 and DVU1394 overlap by 116 nucleotides DVU1394 and DVU1395 overlap by 29 nucleotides DVU1395 and bfr are separated by 448 nucleotides
DVU1392: DVU1392 - NLP/P60 family protein (TIGR), at 1,464,438 to 1,465,154
DVU1392
DVU1393: DVU1393 - hypothetical protein (TIGR), at 1,465,241 to 1,465,402
DVU1393
DVU1394: DVU1394 - hypothetical protein (TIGR), at 1,465,287 to 1,465,445
DVU1394
DVU1395: DVU1395 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 1,465,417 to 1,465,638
DVU1395
DVU1397: bfr - bacterioferritin (TIGR), at 1,466,087 to 1,466,626
bfr
Position (kb)
1465
1466 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1464.268 kb on - strand at 1464.272 kb on + strand at 1464.378 kb on + strand at 1464.400 kb on - strand at 1464.400 kb on - strand at 1464.417 kb on + strand at 1464.425 kb on - strand at 1464.460 kb on - strand at 1464.827 kb on + strand, within DVU1392 at 1464.858 kb on + strand, within DVU1392 at 1464.858 kb on + strand, within DVU1392 at 1464.880 kb on + strand, within DVU1392 at 1464.881 kb on - strand, within DVU1392 at 1465.150 kb on + strand at 1465.206 kb on + strand at 1465.212 kb on - strand at 1465.229 kb on + strand at 1465.259 kb on + strand, within DVU1393 at 1465.259 kb on + strand, within DVU1393 at 1465.267 kb on - strand, within DVU1393 at 1465.329 kb on - strand at 1465.511 kb on + strand, within DVU1395 at 1465.524 kb on - strand, within DVU1395 at 1465.527 kb on + strand, within DVU1395 at 1465.631 kb on - strand at 1465.632 kb on + strand at 1465.641 kb on - strand at 1465.696 kb on - strand at 1465.761 kb on + strand at 1465.769 kb on - strand at 1465.786 kb on - strand at 1465.827 kb on + strand at 1465.937 kb on - strand at 1466.024 kb on - strand at 1466.072 kb on - strand at 1466.107 kb on - strand at 1466.151 kb on + strand, within bfr at 1466.178 kb on + strand, within bfr at 1466.186 kb on - strand, within bfr at 1466.219 kb on + strand, within bfr at 1466.241 kb on + strand, within bfr at 1466.351 kb on + strand, within bfr
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,464,268 - -0.3 1,464,272 + -0.1 1,464,378 + -0.4 1,464,400 - -0.1 1,464,400 - +0.5 1,464,417 + +0.0 1,464,425 - -0.4 1,464,460 - -0.2 1,464,827 + DVU1392 0.54 -0.2 1,464,858 + DVU1392 0.59 -0.1 1,464,858 + DVU1392 0.59 -0.3 1,464,880 + DVU1392 0.62 -0.4 1,464,881 - DVU1392 0.62 +0.0 1,465,150 + +1.0 1,465,206 + +0.6 1,465,212 - +0.1 1,465,229 + -1.5 1,465,259 + DVU1393 0.11 -3.1 1,465,259 + DVU1393 0.11 -0.3 1,465,267 - DVU1393 0.16 -0.7 1,465,329 - -0.4 1,465,511 + DVU1395 0.42 -0.0 1,465,524 - DVU1395 0.48 -1.4 1,465,527 + DVU1395 0.50 -0.1 1,465,631 - -0.4 1,465,632 + -0.7 1,465,641 - -0.1 1,465,696 - -0.1 1,465,761 + +0.0 1,465,769 - -0.2 1,465,786 - -0.0 1,465,827 + -0.1 1,465,937 - -2.6 1,466,024 - +0.5 1,466,072 - +0.1 1,466,107 - -0.9 1,466,151 + bfr DVU1397 0.12 -0.3 1,466,178 + bfr DVU1397 0.17 -0.3 1,466,186 - bfr DVU1397 0.18 -1.3 1,466,219 + bfr DVU1397 0.24 -3.3 1,466,241 + bfr DVU1397 0.29 -0.2 1,466,351 + bfr DVU1397 0.49 +0.1
Or see this region's nucleotide sequence