Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1393

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1392 and DVU1393 are separated by 86 nucleotidesDVU1393 and DVU1394 overlap by 116 nucleotidesDVU1394 and DVU1395 overlap by 29 nucleotidesDVU1395 and bfr are separated by 448 nucleotides DVU1392: DVU1392 - NLP/P60 family protein (TIGR), at 1,464,438 to 1,465,154 DVU1392 DVU1393: DVU1393 - hypothetical protein (TIGR), at 1,465,241 to 1,465,402 DVU1393 DVU1394: DVU1394 - hypothetical protein (TIGR), at 1,465,287 to 1,465,445 DVU1394 DVU1395: DVU1395 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 1,465,417 to 1,465,638 DVU1395 DVU1397: bfr - bacterioferritin (TIGR), at 1,466,087 to 1,466,626 bfr Position (kb) 1465 1466Strain fitness (log2 ratio) -3 -2 -1 0 1at 1464.268 kb on - strandat 1464.272 kb on + strandat 1464.378 kb on + strandat 1464.400 kb on - strandat 1464.400 kb on - strandat 1464.417 kb on + strandat 1464.425 kb on - strandat 1464.460 kb on - strandat 1464.827 kb on + strand, within DVU1392at 1464.858 kb on + strand, within DVU1392at 1464.858 kb on + strand, within DVU1392at 1464.880 kb on + strand, within DVU1392at 1464.881 kb on - strand, within DVU1392at 1465.150 kb on + strandat 1465.206 kb on + strandat 1465.212 kb on - strandat 1465.229 kb on + strandat 1465.259 kb on + strand, within DVU1393at 1465.259 kb on + strand, within DVU1393at 1465.267 kb on - strand, within DVU1393at 1465.329 kb on - strandat 1465.511 kb on + strand, within DVU1395at 1465.524 kb on - strand, within DVU1395at 1465.527 kb on + strand, within DVU1395at 1465.631 kb on - strandat 1465.632 kb on + strandat 1465.641 kb on - strandat 1465.696 kb on - strandat 1465.761 kb on + strandat 1465.769 kb on - strandat 1465.786 kb on - strandat 1465.827 kb on + strandat 1465.937 kb on - strandat 1466.024 kb on - strandat 1466.072 kb on - strandat 1466.107 kb on - strandat 1466.151 kb on + strand, within bfrat 1466.178 kb on + strand, within bfrat 1466.186 kb on - strand, within bfrat 1466.219 kb on + strand, within bfrat 1466.241 kb on + strand, within bfrat 1466.351 kb on + strand, within bfr

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,464,268 - -0.3
1,464,272 + -0.1
1,464,378 + -0.4
1,464,400 - -0.1
1,464,400 - +0.5
1,464,417 + +0.0
1,464,425 - -0.4
1,464,460 - -0.2
1,464,827 + DVU1392 0.54 -0.2
1,464,858 + DVU1392 0.59 -0.1
1,464,858 + DVU1392 0.59 -0.3
1,464,880 + DVU1392 0.62 -0.4
1,464,881 - DVU1392 0.62 +0.0
1,465,150 + +1.0
1,465,206 + +0.6
1,465,212 - +0.1
1,465,229 + -1.5
1,465,259 + DVU1393 0.11 -3.1
1,465,259 + DVU1393 0.11 -0.3
1,465,267 - DVU1393 0.16 -0.7
1,465,329 - -0.4
1,465,511 + DVU1395 0.42 -0.0
1,465,524 - DVU1395 0.48 -1.4
1,465,527 + DVU1395 0.50 -0.1
1,465,631 - -0.4
1,465,632 + -0.7
1,465,641 - -0.1
1,465,696 - -0.1
1,465,761 + +0.0
1,465,769 - -0.2
1,465,786 - -0.0
1,465,827 + -0.1
1,465,937 - -2.6
1,466,024 - +0.5
1,466,072 - +0.1
1,466,107 - -0.9
1,466,151 + bfr DVU1397 0.12 -0.3
1,466,178 + bfr DVU1397 0.17 -0.3
1,466,186 - bfr DVU1397 0.18 -1.3
1,466,219 + bfr DVU1397 0.24 -3.3
1,466,241 + bfr DVU1397 0.29 -0.2
1,466,351 + bfr DVU1397 0.49 +0.1

Or see this region's nucleotide sequence