Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1381 and DVU1382 are separated by 60 nucleotides DVU1382 and DORF10862 are separated by 89 nucleotides DORF10862 and pyrR are separated by 145 nucleotides pyrR and DVU1386 are separated by 332 nucleotides
DVU1381: DVU1381 - hypothetical protein (TIGR), at 1,455,324 to 1,455,539
DVU1381
DVU1382: DVU1382 - HesB family selenoprotein (TIGR), at 1,455,600 to 1,455,923
DVU1382
DORF10862: DORF10862 - SEED: HesB-like domain, at 1,456,013 to 1,456,315
DORF10862
DVU1384: pyrR - pyrimidine operon regulatory protein (TIGR), at 1,456,461 to 1,456,997
pyrR
DVU1386: DVU1386 - membrane protein, putative (TIGR), at 1,457,330 to 1,458,880
DVU1386
Position (kb)
1456
1457 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1455.930 kb on - strand at 1456.167 kb on - strand, within DORF10862 at 1456.204 kb on + strand, within DORF10862 at 1456.402 kb on + strand at 1456.416 kb on + strand at 1456.436 kb on - strand at 1456.448 kb on - strand at 1456.469 kb on - strand at 1456.526 kb on + strand, within pyrR at 1456.539 kb on + strand, within pyrR at 1456.636 kb on - strand, within pyrR at 1456.716 kb on - strand, within pyrR at 1456.735 kb on + strand, within pyrR at 1457.097 kb on + strand at 1457.105 kb on - strand at 1457.105 kb on - strand at 1457.188 kb on - strand at 1457.304 kb on + strand at 1457.365 kb on + strand at 1457.365 kb on + strand at 1457.464 kb on - strand at 1457.464 kb on - strand at 1457.536 kb on - strand, within DVU1386 at 1457.627 kb on + strand, within DVU1386 at 1457.652 kb on + strand, within DVU1386 at 1457.652 kb on + strand, within DVU1386 at 1457.652 kb on + strand, within DVU1386 at 1457.652 kb on + strand, within DVU1386 at 1457.660 kb on - strand, within DVU1386 at 1457.660 kb on - strand, within DVU1386 at 1457.671 kb on - strand, within DVU1386 at 1457.676 kb on + strand, within DVU1386 at 1457.733 kb on - strand, within DVU1386 at 1457.733 kb on - strand, within DVU1386 at 1457.754 kb on - strand, within DVU1386 at 1457.754 kb on - strand, within DVU1386 at 1457.777 kb on + strand, within DVU1386 at 1457.869 kb on + strand, within DVU1386 at 1457.878 kb on - strand, within DVU1386 at 1457.905 kb on + strand, within DVU1386 at 1457.907 kb on + strand, within DVU1386 at 1457.913 kb on - strand, within DVU1386 at 1457.913 kb on - strand, within DVU1386
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,455,930 - -0.0 1,456,167 - DORF10862 0.51 +0.6 1,456,204 + DORF10862 0.63 +0.2 1,456,402 + +0.2 1,456,416 + +0.3 1,456,436 - +0.3 1,456,448 - -0.4 1,456,469 - -0.0 1,456,526 + pyrR DVU1384 0.12 -2.5 1,456,539 + pyrR DVU1384 0.15 -1.2 1,456,636 - pyrR DVU1384 0.33 +0.2 1,456,716 - pyrR DVU1384 0.47 -0.1 1,456,735 + pyrR DVU1384 0.51 -0.6 1,457,097 + -0.3 1,457,105 - -3.1 1,457,105 - -0.2 1,457,188 - +0.7 1,457,304 + -2.0 1,457,365 + -0.4 1,457,365 + -2.1 1,457,464 - +0.2 1,457,464 - +0.1 1,457,536 - DVU1386 0.13 -0.3 1,457,627 + DVU1386 0.19 -0.1 1,457,652 + DVU1386 0.21 +0.2 1,457,652 + DVU1386 0.21 -0.2 1,457,652 + DVU1386 0.21 -0.2 1,457,652 + DVU1386 0.21 +0.3 1,457,660 - DVU1386 0.21 -0.1 1,457,660 - DVU1386 0.21 -0.4 1,457,671 - DVU1386 0.22 -0.2 1,457,676 + DVU1386 0.22 -0.3 1,457,733 - DVU1386 0.26 -0.1 1,457,733 - DVU1386 0.26 -0.3 1,457,754 - DVU1386 0.27 -1.0 1,457,754 - DVU1386 0.27 +0.7 1,457,777 + DVU1386 0.29 +0.2 1,457,869 + DVU1386 0.35 -0.7 1,457,878 - DVU1386 0.35 -0.7 1,457,905 + DVU1386 0.37 +0.2 1,457,907 + DVU1386 0.37 +0.4 1,457,913 - DVU1386 0.38 -0.8 1,457,913 - DVU1386 0.38 +0.3
Or see this region's nucleotide sequence