Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1384

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1381 and DVU1382 are separated by 60 nucleotidesDVU1382 and DORF10862 are separated by 89 nucleotidesDORF10862 and pyrR are separated by 145 nucleotidespyrR and DVU1386 are separated by 332 nucleotides DVU1381: DVU1381 - hypothetical protein (TIGR), at 1,455,324 to 1,455,539 DVU1381 DVU1382: DVU1382 - HesB family selenoprotein (TIGR), at 1,455,600 to 1,455,923 DVU1382 DORF10862: DORF10862 - SEED: HesB-like domain, at 1,456,013 to 1,456,315 DORF10862 DVU1384: pyrR - pyrimidine operon regulatory protein (TIGR), at 1,456,461 to 1,456,997 pyrR DVU1386: DVU1386 - membrane protein, putative (TIGR), at 1,457,330 to 1,458,880 DVU1386 Position (kb) 1456 1457Strain fitness (log2 ratio) -3 -2 -1 0 1at 1455.930 kb on - strandat 1456.167 kb on - strand, within DORF10862at 1456.204 kb on + strand, within DORF10862at 1456.402 kb on + strandat 1456.416 kb on + strandat 1456.436 kb on - strandat 1456.448 kb on - strandat 1456.469 kb on - strandat 1456.526 kb on + strand, within pyrRat 1456.539 kb on + strand, within pyrRat 1456.636 kb on - strand, within pyrRat 1456.716 kb on - strand, within pyrRat 1456.735 kb on + strand, within pyrRat 1457.097 kb on + strandat 1457.105 kb on - strandat 1457.105 kb on - strandat 1457.188 kb on - strandat 1457.304 kb on + strandat 1457.365 kb on + strandat 1457.365 kb on + strandat 1457.464 kb on - strandat 1457.464 kb on - strandat 1457.536 kb on - strand, within DVU1386at 1457.627 kb on + strand, within DVU1386at 1457.652 kb on + strand, within DVU1386at 1457.652 kb on + strand, within DVU1386at 1457.652 kb on + strand, within DVU1386at 1457.652 kb on + strand, within DVU1386at 1457.660 kb on - strand, within DVU1386at 1457.660 kb on - strand, within DVU1386at 1457.671 kb on - strand, within DVU1386at 1457.676 kb on + strand, within DVU1386at 1457.733 kb on - strand, within DVU1386at 1457.733 kb on - strand, within DVU1386at 1457.754 kb on - strand, within DVU1386at 1457.754 kb on - strand, within DVU1386at 1457.777 kb on + strand, within DVU1386at 1457.869 kb on + strand, within DVU1386at 1457.878 kb on - strand, within DVU1386at 1457.905 kb on + strand, within DVU1386at 1457.907 kb on + strand, within DVU1386at 1457.913 kb on - strand, within DVU1386at 1457.913 kb on - strand, within DVU1386

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,455,930 - -0.0
1,456,167 - DORF10862 0.51 +0.6
1,456,204 + DORF10862 0.63 +0.2
1,456,402 + +0.2
1,456,416 + +0.3
1,456,436 - +0.3
1,456,448 - -0.4
1,456,469 - -0.0
1,456,526 + pyrR DVU1384 0.12 -2.5
1,456,539 + pyrR DVU1384 0.15 -1.2
1,456,636 - pyrR DVU1384 0.33 +0.2
1,456,716 - pyrR DVU1384 0.47 -0.1
1,456,735 + pyrR DVU1384 0.51 -0.6
1,457,097 + -0.3
1,457,105 - -3.1
1,457,105 - -0.2
1,457,188 - +0.7
1,457,304 + -2.0
1,457,365 + -0.4
1,457,365 + -2.1
1,457,464 - +0.2
1,457,464 - +0.1
1,457,536 - DVU1386 0.13 -0.3
1,457,627 + DVU1386 0.19 -0.1
1,457,652 + DVU1386 0.21 +0.2
1,457,652 + DVU1386 0.21 -0.2
1,457,652 + DVU1386 0.21 -0.2
1,457,652 + DVU1386 0.21 +0.3
1,457,660 - DVU1386 0.21 -0.1
1,457,660 - DVU1386 0.21 -0.4
1,457,671 - DVU1386 0.22 -0.2
1,457,676 + DVU1386 0.22 -0.3
1,457,733 - DVU1386 0.26 -0.1
1,457,733 - DVU1386 0.26 -0.3
1,457,754 - DVU1386 0.27 -1.0
1,457,754 - DVU1386 0.27 +0.7
1,457,777 + DVU1386 0.29 +0.2
1,457,869 + DVU1386 0.35 -0.7
1,457,878 - DVU1386 0.35 -0.7
1,457,905 + DVU1386 0.37 +0.2
1,457,907 + DVU1386 0.37 +0.4
1,457,913 - DVU1386 0.38 -0.8
1,457,913 - DVU1386 0.38 +0.3

Or see this region's nucleotide sequence