Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1280

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsH and folP overlap by 4 nucleotidesfolP and DVU1280 are separated by 8 nucleotidesDVU1280 and DVU1281 are separated by 1 nucleotidesDVU1281 and glmM are separated by 59 nucleotides DVU1278: ftsH - cell division protein FtsH (TIGR), at 1,369,986 to 1,371,956 ftsH DVU1279: folP - dihydropteroate synthase (TIGR), at 1,371,953 to 1,372,813 folP DVU1280: DVU1280 - conserved hypothetical protein TIGR00159 (TIGR), at 1,372,822 to 1,373,568 DVU1280 DVU1281: DVU1281 - conserved hypothetical protein (TIGR), at 1,373,570 to 1,374,472 DVU1281 DVU1282: glmM - phosphoglucosamine mutase (TIGR), at 1,374,532 to 1,375,884 glmM Position (kb) 1372 1373 1374Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1371.911 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.999 kb on + strand, within DVU1280at 1373.169 kb on - strand, within DVU1280at 1373.348 kb on - strand, within DVU1280at 1373.419 kb on + strand, within DVU1280at 1373.524 kb on - strandat 1373.816 kb on + strand, within DVU1281at 1373.841 kb on - strand, within DVU1281at 1374.004 kb on - strand, within DVU1281at 1374.026 kb on - strand, within DVU1281at 1374.135 kb on + strand, within DVU1281at 1374.166 kb on + strand, within DVU1281at 1374.261 kb on - strand, within DVU1281at 1374.293 kb on - strand, within DVU1281at 1374.315 kb on + strand, within DVU1281at 1374.325 kb on + strand, within DVU1281at 1374.331 kb on - strand, within DVU1281at 1374.345 kb on + strand, within DVU1281at 1374.363 kb on + strand, within DVU1281at 1374.409 kb on - strandat 1374.428 kb on - strandat 1374.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,371,911 - -1.6
1,372,780 - -0.0
1,372,780 - -0.0
1,372,780 - +0.1
1,372,780 - -0.3
1,372,999 + DVU1280 0.24 -1.6
1,373,169 - DVU1280 0.46 -0.6
1,373,348 - DVU1280 0.70 -0.9
1,373,419 + DVU1280 0.80 -0.5
1,373,524 - -0.9
1,373,816 + DVU1281 0.27 -0.6
1,373,841 - DVU1281 0.30 -1.3
1,374,004 - DVU1281 0.48 -0.2
1,374,026 - DVU1281 0.50 -0.3
1,374,135 + DVU1281 0.63 +1.8
1,374,166 + DVU1281 0.66 -0.2
1,374,261 - DVU1281 0.77 -0.7
1,374,293 - DVU1281 0.80 -0.4
1,374,315 + DVU1281 0.83 -0.1
1,374,325 + DVU1281 0.84 -0.2
1,374,331 - DVU1281 0.84 -0.1
1,374,345 + DVU1281 0.86 +1.6
1,374,363 + DVU1281 0.88 -4.0
1,374,409 - +0.9
1,374,428 - +0.2
1,374,444 - -0.5

Or see this region's nucleotide sequence