Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1186

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1183 and DVU1185 are separated by 170 nucleotidesDVU1185 and mazG are separated by 27 nucleotidesmazG and DVU1187 are separated by 116 nucleotidesDVU1187 and DVU1188 are separated by 47 nucleotides DVU1183: DVU1183 - HD domain protein (TIGR), at 1,273,387 to 1,274,634 DVU1183 DVU1185: DVU1185 - colicin V production family protein (TIGR), at 1,274,805 to 1,275,284 DVU1185 DVU1186: mazG - phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data), at 1,275,312 to 1,276,115 mazG DVU1187: DVU1187 - hypothetical protein (TIGR), at 1,276,232 to 1,277,056 DVU1187 DVU1188: DVU1188 - hypothetical protein (TIGR), at 1,277,104 to 1,277,325 DVU1188 Position (kb) 1275 1276 1277Strain fitness (log2 ratio) -3 -2 -1 0 1at 1274.404 kb on + strand, within DVU1183at 1274.407 kb on + strand, within DVU1183at 1274.413 kb on - strand, within DVU1183at 1274.429 kb on + strand, within DVU1183at 1274.475 kb on - strand, within DVU1183at 1274.490 kb on + strand, within DVU1183at 1274.619 kb on + strandat 1274.627 kb on - strandat 1274.670 kb on - strandat 1274.728 kb on - strandat 1274.741 kb on + strandat 1274.754 kb on - strandat 1274.794 kb on - strandat 1274.886 kb on - strand, within DVU1185at 1275.013 kb on - strand, within DVU1185at 1275.263 kb on - strandat 1275.330 kb on + strandat 1275.370 kb on + strandat 1275.372 kb on + strandat 1275.439 kb on + strand, within mazGat 1275.524 kb on + strand, within mazGat 1275.637 kb on - strand, within mazGat 1275.725 kb on - strand, within mazGat 1275.830 kb on + strand, within mazGat 1275.883 kb on - strand, within mazGat 1275.979 kb on + strand, within mazGat 1276.052 kb on + strandat 1276.118 kb on - strandat 1276.143 kb on - strandat 1276.214 kb on + strandat 1276.254 kb on - strandat 1276.276 kb on - strandat 1276.327 kb on + strand, within DVU1187at 1276.327 kb on + strand, within DVU1187at 1276.344 kb on - strand, within DVU1187at 1276.495 kb on + strand, within DVU1187at 1276.510 kb on + strand, within DVU1187at 1276.569 kb on - strand, within DVU1187at 1276.666 kb on + strand, within DVU1187at 1276.704 kb on + strand, within DVU1187at 1276.933 kb on - strand, within DVU1187at 1276.938 kb on - strand, within DVU1187at 1276.938 kb on - strand, within DVU1187at 1276.993 kb on - strandat 1277.041 kb on + strandat 1277.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,274,404 + DVU1183 0.81 -0.9
1,274,407 + DVU1183 0.82 -0.1
1,274,413 - DVU1183 0.82 -0.2
1,274,429 + DVU1183 0.83 +0.2
1,274,475 - DVU1183 0.87 +0.9
1,274,490 + DVU1183 0.88 -0.0
1,274,619 + +0.0
1,274,627 - -0.4
1,274,670 - -1.4
1,274,728 - -0.6
1,274,741 + -0.1
1,274,754 - -0.3
1,274,794 - -1.3
1,274,886 - DVU1185 0.17 -0.0
1,275,013 - DVU1185 0.43 -0.5
1,275,263 - -0.5
1,275,330 + +0.0
1,275,370 + -1.1
1,275,372 + -0.7
1,275,439 + mazG DVU1186 0.16 -0.8
1,275,524 + mazG DVU1186 0.26 -0.5
1,275,637 - mazG DVU1186 0.40 +0.4
1,275,725 - mazG DVU1186 0.51 -0.6
1,275,830 + mazG DVU1186 0.64 -0.1
1,275,883 - mazG DVU1186 0.71 -0.3
1,275,979 + mazG DVU1186 0.83 -1.1
1,276,052 + -1.3
1,276,118 - -0.2
1,276,143 - -0.5
1,276,214 + +0.2
1,276,254 - -0.9
1,276,276 - +0.1
1,276,327 + DVU1187 0.12 -0.6
1,276,327 + DVU1187 0.12 -0.3
1,276,344 - DVU1187 0.14 -2.1
1,276,495 + DVU1187 0.32 -0.0
1,276,510 + DVU1187 0.34 +1.6
1,276,569 - DVU1187 0.41 -0.2
1,276,666 + DVU1187 0.53 -0.5
1,276,704 + DVU1187 0.57 -3.3
1,276,933 - DVU1187 0.85 +0.0
1,276,938 - DVU1187 0.86 -0.5
1,276,938 - DVU1187 0.86 -0.9
1,276,993 - +0.4
1,277,041 + -0.1
1,277,087 + -0.2

Or see this region's nucleotide sequence