Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1170

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1169 and DVU1170 are separated by 311 nucleotidesDVU1170 and mviN-1 are separated by 605 nucleotides DVU1169: DVU1169 - methyl-accepting chemotaxis protein (TIGR), at 1,261,035 to 1,263,449 DVU1169 DVU1170: DVU1170 - hypothetical protein (TIGR), at 1,263,761 to 1,263,949 DVU1170 DVU1173: mviN-1 - integral membrane protein MviN (TIGR), at 1,264,555 to 1,266,111 mviN-1 Position (kb) 1263 1264Strain fitness (log2 ratio) -3 -2 -1 0 1at 1262.798 kb on - strand, within DVU1169at 1262.848 kb on - strand, within DVU1169at 1262.987 kb on - strand, within DVU1169at 1262.995 kb on + strand, within DVU1169at 1263.005 kb on + strand, within DVU1169at 1263.205 kb on - strand, within DVU1169at 1263.268 kb on - strandat 1263.270 kb on + strandat 1263.278 kb on - strandat 1263.574 kb on - strandat 1263.736 kb on + strandat 1263.744 kb on - strandat 1263.774 kb on - strandat 1263.774 kb on - strandat 1263.802 kb on + strand, within DVU1170at 1263.919 kb on + strand, within DVU1170at 1264.027 kb on - strandat 1264.037 kb on - strandat 1264.121 kb on - strandat 1264.237 kb on + strandat 1264.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,262,798 - DVU1169 0.73 +0.6
1,262,848 - DVU1169 0.75 -0.3
1,262,987 - DVU1169 0.81 -0.6
1,262,995 + DVU1169 0.81 -1.3
1,263,005 + DVU1169 0.82 -0.4
1,263,205 - DVU1169 0.90 -1.3
1,263,268 - -0.5
1,263,270 + +0.5
1,263,278 - -0.8
1,263,574 - -0.2
1,263,736 + -2.0
1,263,744 - -2.9
1,263,774 - +0.0
1,263,774 - +0.3
1,263,802 + DVU1170 0.22 -0.2
1,263,919 + DVU1170 0.84 -1.2
1,264,027 - -2.2
1,264,037 - +0.8
1,264,121 - -0.2
1,264,237 + -0.6
1,264,255 - +0.1

Or see this region's nucleotide sequence