Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1097

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargF and DVU1097 are separated by 141 nucleotidesDVU1097 and tRNA-Thr are separated by 72 nucleotidestRNA-Thr and DVU1098 are separated by 271 nucleotides DVU1096: argF - ornithine carbamoyltransferase (TIGR), at 1,202,025 to 1,202,927 argF DVU1097: DVU1097 - conserved hypothetical protein (TIGR), at 1,203,069 to 1,203,818 DVU1097 DVU_tRNA-Thr-2: tRNA-Thr - tRNA with anticodon CGT for Thr (VIMSS-AUTO), at 1,203,891 to 1,203,966 tRNA-Thr DVU1098: DVU1098 - adenine specific DNA methyltransferase, putative (TIGR), at 1,204,238 to 1,204,981 DVU1098 Position (kb) 1203 1204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1202.099 kb on + strandat 1202.147 kb on + strand, within argFat 1202.398 kb on + strand, within argFat 1202.398 kb on + strand, within argFat 1202.398 kb on + strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.487 kb on - strand, within argFat 1202.495 kb on + strand, within argFat 1202.520 kb on - strand, within argFat 1202.552 kb on + strand, within argFat 1202.618 kb on + strand, within argFat 1202.626 kb on - strand, within argFat 1202.643 kb on - strand, within argFat 1202.650 kb on - strand, within argFat 1202.650 kb on - strand, within argFat 1202.655 kb on - strand, within argFat 1202.683 kb on + strand, within argFat 1202.743 kb on - strand, within argFat 1202.765 kb on + strand, within argFat 1202.862 kb on - strandat 1202.981 kb on + strandat 1203.070 kb on + strandat 1203.097 kb on - strandat 1203.242 kb on + strand, within DVU1097at 1203.250 kb on - strand, within DVU1097at 1203.268 kb on - strand, within DVU1097at 1203.283 kb on + strand, within DVU1097at 1203.283 kb on + strand, within DVU1097at 1203.302 kb on + strand, within DVU1097at 1203.302 kb on + strand, within DVU1097at 1203.310 kb on - strand, within DVU1097at 1203.388 kb on - strand, within DVU1097at 1203.474 kb on + strand, within DVU1097at 1203.492 kb on - strand, within DVU1097at 1203.547 kb on + strand, within DVU1097at 1203.566 kb on - strand, within DVU1097at 1203.731 kb on + strand, within DVU1097at 1203.775 kb on - strandat 1203.804 kb on - strandat 1203.812 kb on + strandat 1204.055 kb on - strandat 1204.067 kb on + strandat 1204.296 kb on + strandat 1204.296 kb on + strandat 1204.304 kb on - strandat 1204.304 kb on - strandat 1204.314 kb on - strand, within DVU1098at 1204.343 kb on + strand, within DVU1098at 1204.351 kb on - strand, within DVU1098at 1204.354 kb on + strand, within DVU1098at 1204.406 kb on + strand, within DVU1098at 1204.471 kb on + strand, within DVU1098at 1204.479 kb on - strand, within DVU1098at 1204.479 kb on - strand, within DVU1098at 1204.486 kb on + strand, within DVU1098at 1204.554 kb on - strand, within DVU1098at 1204.565 kb on - strand, within DVU1098at 1204.589 kb on + strand, within DVU1098at 1204.590 kb on + strand, within DVU1098at 1204.624 kb on + strand, within DVU1098

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,202,099 + -3.2
1,202,147 + argF DVU1096 0.14 -1.2
1,202,398 + argF DVU1096 0.41 -3.3
1,202,398 + argF DVU1096 0.41 -4.5
1,202,398 + argF DVU1096 0.41 -3.3
1,202,406 - argF DVU1096 0.42 -2.2
1,202,406 - argF DVU1096 0.42 -4.2
1,202,406 - argF DVU1096 0.42 -2.9
1,202,406 - argF DVU1096 0.42 -2.9
1,202,406 - argF DVU1096 0.42 -2.5
1,202,406 - argF DVU1096 0.42 -4.4
1,202,487 - argF DVU1096 0.51 -3.7
1,202,495 + argF DVU1096 0.52 -4.5
1,202,520 - argF DVU1096 0.55 -0.2
1,202,552 + argF DVU1096 0.58 -4.4
1,202,618 + argF DVU1096 0.66 -1.2
1,202,626 - argF DVU1096 0.67 -1.4
1,202,643 - argF DVU1096 0.68 -0.8
1,202,650 - argF DVU1096 0.69 -3.4
1,202,650 - argF DVU1096 0.69 -3.3
1,202,655 - argF DVU1096 0.70 -2.2
1,202,683 + argF DVU1096 0.73 -4.5
1,202,743 - argF DVU1096 0.80 -1.3
1,202,765 + argF DVU1096 0.82 -2.5
1,202,862 - -3.6
1,202,981 + +0.6
1,203,070 + +0.3
1,203,097 - -1.4
1,203,242 + DVU1097 0.23 -2.2
1,203,250 - DVU1097 0.24 -1.7
1,203,268 - DVU1097 0.27 -1.3
1,203,283 + DVU1097 0.29 -1.2
1,203,283 + DVU1097 0.29 -1.2
1,203,302 + DVU1097 0.31 -2.2
1,203,302 + DVU1097 0.31 -1.2
1,203,310 - DVU1097 0.32 -1.9
1,203,388 - DVU1097 0.43 -0.8
1,203,474 + DVU1097 0.54 -1.4
1,203,492 - DVU1097 0.56 -1.1
1,203,547 + DVU1097 0.64 -1.3
1,203,566 - DVU1097 0.66 -1.7
1,203,731 + DVU1097 0.88 -0.4
1,203,775 - +0.7
1,203,804 - +1.2
1,203,812 + +1.6
1,204,055 - -0.3
1,204,067 + +0.2
1,204,296 + +0.2
1,204,296 + +0.1
1,204,304 - +0.1
1,204,304 - +0.4
1,204,314 - DVU1098 0.10 -0.1
1,204,343 + DVU1098 0.14 -1.4
1,204,351 - DVU1098 0.15 +0.1
1,204,354 + DVU1098 0.16 -0.6
1,204,406 + DVU1098 0.23 -0.5
1,204,471 + DVU1098 0.31 -0.1
1,204,479 - DVU1098 0.32 +1.4
1,204,479 - DVU1098 0.32 +0.8
1,204,486 + DVU1098 0.33 -0.3
1,204,554 - DVU1098 0.42 -0.4
1,204,565 - DVU1098 0.44 -0.2
1,204,589 + DVU1098 0.47 -1.0
1,204,590 + DVU1098 0.47 -1.1
1,204,624 + DVU1098 0.52 -0.0

Or see this region's nucleotide sequence