Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argF and DVU1097 are separated by 141 nucleotides DVU1097 and tRNA-Thr are separated by 72 nucleotides tRNA-Thr and DVU1098 are separated by 271 nucleotides
DVU1096: argF - ornithine carbamoyltransferase (TIGR), at 1,202,025 to 1,202,927
argF
DVU1097: DVU1097 - conserved hypothetical protein (TIGR), at 1,203,069 to 1,203,818
DVU1097
DVU_tRNA-Thr-2: tRNA-Thr - tRNA with anticodon CGT for Thr (VIMSS-AUTO), at 1,203,891 to 1,203,966
tRNA-Thr
DVU1098: DVU1098 - adenine specific DNA methyltransferase, putative (TIGR), at 1,204,238 to 1,204,981
DVU1098
Position (kb)
1203
1204 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1202.099 kb on + strand at 1202.147 kb on + strand, within argF at 1202.398 kb on + strand, within argF at 1202.398 kb on + strand, within argF at 1202.398 kb on + strand, within argF at 1202.406 kb on - strand, within argF at 1202.406 kb on - strand, within argF at 1202.406 kb on - strand, within argF at 1202.406 kb on - strand, within argF at 1202.406 kb on - strand, within argF at 1202.406 kb on - strand, within argF at 1202.487 kb on - strand, within argF at 1202.495 kb on + strand, within argF at 1202.520 kb on - strand, within argF at 1202.552 kb on + strand, within argF at 1202.618 kb on + strand, within argF at 1202.626 kb on - strand, within argF at 1202.643 kb on - strand, within argF at 1202.650 kb on - strand, within argF at 1202.650 kb on - strand, within argF at 1202.655 kb on - strand, within argF at 1202.683 kb on + strand, within argF at 1202.743 kb on - strand, within argF at 1202.765 kb on + strand, within argF at 1202.862 kb on - strand at 1202.981 kb on + strand at 1203.070 kb on + strand at 1203.097 kb on - strand at 1203.242 kb on + strand, within DVU1097 at 1203.250 kb on - strand, within DVU1097 at 1203.268 kb on - strand, within DVU1097 at 1203.283 kb on + strand, within DVU1097 at 1203.283 kb on + strand, within DVU1097 at 1203.302 kb on + strand, within DVU1097 at 1203.302 kb on + strand, within DVU1097 at 1203.310 kb on - strand, within DVU1097 at 1203.388 kb on - strand, within DVU1097 at 1203.474 kb on + strand, within DVU1097 at 1203.492 kb on - strand, within DVU1097 at 1203.547 kb on + strand, within DVU1097 at 1203.566 kb on - strand, within DVU1097 at 1203.731 kb on + strand, within DVU1097 at 1203.775 kb on - strand at 1203.804 kb on - strand at 1203.812 kb on + strand at 1204.055 kb on - strand at 1204.067 kb on + strand at 1204.296 kb on + strand at 1204.296 kb on + strand at 1204.304 kb on - strand at 1204.304 kb on - strand at 1204.314 kb on - strand, within DVU1098 at 1204.343 kb on + strand, within DVU1098 at 1204.351 kb on - strand, within DVU1098 at 1204.354 kb on + strand, within DVU1098 at 1204.406 kb on + strand, within DVU1098 at 1204.471 kb on + strand, within DVU1098 at 1204.479 kb on - strand, within DVU1098 at 1204.479 kb on - strand, within DVU1098 at 1204.486 kb on + strand, within DVU1098 at 1204.554 kb on - strand, within DVU1098 at 1204.565 kb on - strand, within DVU1098 at 1204.589 kb on + strand, within DVU1098 at 1204.590 kb on + strand, within DVU1098 at 1204.624 kb on + strand, within DVU1098
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 1,202,099 + -3.2 1,202,147 + argF DVU1096 0.14 -1.2 1,202,398 + argF DVU1096 0.41 -3.3 1,202,398 + argF DVU1096 0.41 -4.5 1,202,398 + argF DVU1096 0.41 -3.3 1,202,406 - argF DVU1096 0.42 -2.2 1,202,406 - argF DVU1096 0.42 -4.2 1,202,406 - argF DVU1096 0.42 -2.9 1,202,406 - argF DVU1096 0.42 -2.9 1,202,406 - argF DVU1096 0.42 -2.5 1,202,406 - argF DVU1096 0.42 -4.4 1,202,487 - argF DVU1096 0.51 -3.7 1,202,495 + argF DVU1096 0.52 -4.5 1,202,520 - argF DVU1096 0.55 -0.2 1,202,552 + argF DVU1096 0.58 -4.4 1,202,618 + argF DVU1096 0.66 -1.2 1,202,626 - argF DVU1096 0.67 -1.4 1,202,643 - argF DVU1096 0.68 -0.8 1,202,650 - argF DVU1096 0.69 -3.4 1,202,650 - argF DVU1096 0.69 -3.3 1,202,655 - argF DVU1096 0.70 -2.2 1,202,683 + argF DVU1096 0.73 -4.5 1,202,743 - argF DVU1096 0.80 -1.3 1,202,765 + argF DVU1096 0.82 -2.5 1,202,862 - -3.6 1,202,981 + +0.6 1,203,070 + +0.3 1,203,097 - -1.4 1,203,242 + DVU1097 0.23 -2.2 1,203,250 - DVU1097 0.24 -1.7 1,203,268 - DVU1097 0.27 -1.3 1,203,283 + DVU1097 0.29 -1.2 1,203,283 + DVU1097 0.29 -1.2 1,203,302 + DVU1097 0.31 -2.2 1,203,302 + DVU1097 0.31 -1.2 1,203,310 - DVU1097 0.32 -1.9 1,203,388 - DVU1097 0.43 -0.8 1,203,474 + DVU1097 0.54 -1.4 1,203,492 - DVU1097 0.56 -1.1 1,203,547 + DVU1097 0.64 -1.3 1,203,566 - DVU1097 0.66 -1.7 1,203,731 + DVU1097 0.88 -0.4 1,203,775 - +0.7 1,203,804 - +1.2 1,203,812 + +1.6 1,204,055 - -0.3 1,204,067 + +0.2 1,204,296 + +0.2 1,204,296 + +0.1 1,204,304 - +0.1 1,204,304 - +0.4 1,204,314 - DVU1098 0.10 -0.1 1,204,343 + DVU1098 0.14 -1.4 1,204,351 - DVU1098 0.15 +0.1 1,204,354 + DVU1098 0.16 -0.6 1,204,406 + DVU1098 0.23 -0.5 1,204,471 + DVU1098 0.31 -0.1 1,204,479 - DVU1098 0.32 +1.4 1,204,479 - DVU1098 0.32 +0.8 1,204,486 + DVU1098 0.33 -0.3 1,204,554 - DVU1098 0.42 -0.4 1,204,565 - DVU1098 0.44 -0.2 1,204,589 + DVU1098 0.47 -1.0 1,204,590 + DVU1098 0.47 -1.1 1,204,624 + DVU1098 0.52 -0.0
Or see this region's nucleotide sequence