Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1095

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargH and argG are separated by 3 nucleotidesargG and argF are separated by 51 nucleotides DVU1094: argH - argininosuccinate lyase (TIGR), at 1,199,397 to 1,200,779 argH DVU1095: argG - argininosuccinate synthase (TIGR), at 1,200,783 to 1,201,973 argG DVU1096: argF - ornithine carbamoyltransferase (TIGR), at 1,202,025 to 1,202,927 argF Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1199.804 kb on - strand, within argHat 1199.820 kb on + strand, within argHat 1199.855 kb on + strand, within argHat 1199.867 kb on + strand, within argHat 1199.880 kb on - strand, within argHat 1200.010 kb on - strand, within argHat 1200.055 kb on + strand, within argHat 1200.302 kb on + strand, within argHat 1200.336 kb on + strand, within argHat 1200.419 kb on + strand, within argHat 1200.427 kb on - strand, within argHat 1200.728 kb on + strandat 1200.733 kb on + strandat 1200.733 kb on + strandat 1200.733 kb on + strandat 1200.741 kb on - strandat 1200.742 kb on + strandat 1200.835 kb on + strandat 1200.857 kb on - strandat 1200.874 kb on - strandat 1200.881 kb on + strandat 1200.936 kb on + strand, within argGat 1201.069 kb on - strand, within argGat 1201.152 kb on + strand, within argGat 1201.251 kb on - strand, within argGat 1201.269 kb on - strand, within argGat 1201.291 kb on + strand, within argGat 1201.325 kb on - strand, within argGat 1201.325 kb on - strand, within argGat 1201.339 kb on - strand, within argGat 1201.371 kb on - strand, within argGat 1201.432 kb on + strand, within argGat 1201.452 kb on - strand, within argGat 1201.479 kb on + strand, within argGat 1201.498 kb on + strand, within argGat 1201.542 kb on - strand, within argGat 1201.562 kb on + strand, within argGat 1201.583 kb on + strand, within argGat 1201.593 kb on + strand, within argGat 1201.688 kb on - strand, within argGat 1201.691 kb on + strand, within argGat 1201.812 kb on - strand, within argGat 1201.819 kb on + strand, within argGat 1201.842 kb on - strand, within argGat 1201.859 kb on + strandat 1201.872 kb on + strandat 1201.894 kb on - strandat 1201.916 kb on - strandat 1201.947 kb on - strandat 1202.099 kb on + strandat 1202.147 kb on + strand, within argFat 1202.398 kb on + strand, within argFat 1202.398 kb on + strand, within argFat 1202.398 kb on + strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.406 kb on - strand, within argFat 1202.487 kb on - strand, within argFat 1202.495 kb on + strand, within argFat 1202.520 kb on - strand, within argFat 1202.552 kb on + strand, within argFat 1202.618 kb on + strand, within argFat 1202.626 kb on - strand, within argFat 1202.643 kb on - strand, within argFat 1202.650 kb on - strand, within argFat 1202.650 kb on - strand, within argFat 1202.655 kb on - strand, within argFat 1202.683 kb on + strand, within argFat 1202.743 kb on - strand, within argFat 1202.765 kb on + strand, within argFat 1202.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,199,804 - argH DVU1094 0.29 -4.6
1,199,820 + argH DVU1094 0.31 -1.4
1,199,855 + argH DVU1094 0.33 -2.5
1,199,867 + argH DVU1094 0.34 -3.8
1,199,880 - argH DVU1094 0.35 -2.7
1,200,010 - argH DVU1094 0.44 -0.9
1,200,055 + argH DVU1094 0.48 -2.7
1,200,302 + argH DVU1094 0.65 -1.0
1,200,336 + argH DVU1094 0.68 -4.5
1,200,419 + argH DVU1094 0.74 -2.9
1,200,427 - argH DVU1094 0.74 -2.9
1,200,728 + -3.9
1,200,733 + -1.1
1,200,733 + -1.9
1,200,733 + -4.3
1,200,741 - -0.4
1,200,742 + -3.5
1,200,835 + -1.9
1,200,857 - -2.7
1,200,874 - -5.0
1,200,881 + -1.3
1,200,936 + argG DVU1095 0.13 -2.0
1,201,069 - argG DVU1095 0.24 -3.7
1,201,152 + argG DVU1095 0.31 -5.2
1,201,251 - argG DVU1095 0.39 -2.4
1,201,269 - argG DVU1095 0.41 -1.5
1,201,291 + argG DVU1095 0.43 -3.7
1,201,325 - argG DVU1095 0.46 -3.0
1,201,325 - argG DVU1095 0.46 -2.7
1,201,339 - argG DVU1095 0.47 -3.6
1,201,371 - argG DVU1095 0.49 -1.5
1,201,432 + argG DVU1095 0.54 -6.1
1,201,452 - argG DVU1095 0.56 -2.7
1,201,479 + argG DVU1095 0.58 -2.4
1,201,498 + argG DVU1095 0.60 -0.4
1,201,542 - argG DVU1095 0.64 -0.2
1,201,562 + argG DVU1095 0.65 -2.8
1,201,583 + argG DVU1095 0.67 -4.3
1,201,593 + argG DVU1095 0.68 -3.1
1,201,688 - argG DVU1095 0.76 -4.3
1,201,691 + argG DVU1095 0.76 -3.9
1,201,812 - argG DVU1095 0.86 -3.0
1,201,819 + argG DVU1095 0.87 -3.9
1,201,842 - argG DVU1095 0.89 -3.7
1,201,859 + -2.8
1,201,872 + -3.8
1,201,894 - -2.1
1,201,916 - -1.4
1,201,947 - -3.0
1,202,099 + -3.2
1,202,147 + argF DVU1096 0.14 -1.2
1,202,398 + argF DVU1096 0.41 -3.3
1,202,398 + argF DVU1096 0.41 -4.5
1,202,398 + argF DVU1096 0.41 -3.3
1,202,406 - argF DVU1096 0.42 -2.2
1,202,406 - argF DVU1096 0.42 -4.2
1,202,406 - argF DVU1096 0.42 -2.9
1,202,406 - argF DVU1096 0.42 -2.9
1,202,406 - argF DVU1096 0.42 -2.5
1,202,406 - argF DVU1096 0.42 -4.4
1,202,487 - argF DVU1096 0.51 -3.7
1,202,495 + argF DVU1096 0.52 -4.5
1,202,520 - argF DVU1096 0.55 -0.2
1,202,552 + argF DVU1096 0.58 -4.4
1,202,618 + argF DVU1096 0.66 -1.2
1,202,626 - argF DVU1096 0.67 -1.4
1,202,643 - argF DVU1096 0.68 -0.8
1,202,650 - argF DVU1096 0.69 -3.4
1,202,650 - argF DVU1096 0.69 -3.3
1,202,655 - argF DVU1096 0.70 -2.2
1,202,683 + argF DVU1096 0.73 -4.5
1,202,743 - argF DVU1096 0.80 -1.3
1,202,765 + argF DVU1096 0.82 -2.5
1,202,862 - -3.6

Or see this region's nucleotide sequence