Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1075

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1073 and rpmH are separated by 203 nucleotidesrpmH and rnpA are separated by 86 nucleotidesrnpA and DVU1076 overlap by 4 nucleotidesDVU1076 and yidC are separated by 7 nucleotides DVU1073: DVU1073 - conserved domain protein (TIGR), at 1,177,463 to 1,178,389 DVU1073 DVU1074: rpmH - ribosomal protein L34 (TIGR), at 1,178,593 to 1,178,727 rpmH DVU1075: rnpA - ribonuclease P protein component (TIGR), at 1,178,814 to 1,179,104 rnpA DVU1076: DVU1076 - conserved hypothetical protein TIGR00278 (TIGR), at 1,179,101 to 1,179,361 DVU1076 DVU1077: yidC - inner membrane protein, 60 kDa (TIGR), at 1,179,369 to 1,180,973 yidC Position (kb) 1178 1179 1180Strain fitness (log2 ratio) -2 -1 0 1at 1177.916 kb on - strand, within DVU1073at 1177.930 kb on - strand, within DVU1073at 1177.930 kb on - strand, within DVU1073at 1177.947 kb on + strand, within DVU1073at 1177.980 kb on + strand, within DVU1073at 1178.006 kb on - strand, within DVU1073at 1178.078 kb on - strand, within DVU1073at 1178.112 kb on - strand, within DVU1073at 1178.153 kb on - strand, within DVU1073at 1178.172 kb on - strand, within DVU1073at 1178.172 kb on - strand, within DVU1073at 1178.205 kb on - strand, within DVU1073at 1178.256 kb on - strand, within DVU1073at 1178.256 kb on - strand, within DVU1073at 1178.256 kb on - strand, within DVU1073at 1178.269 kb on + strand, within DVU1073at 1178.277 kb on - strand, within DVU1073at 1178.277 kb on - strand, within DVU1073at 1178.277 kb on - strand, within DVU1073at 1178.305 kb on + strandat 1178.306 kb on + strandat 1178.324 kb on - strandat 1178.334 kb on - strandat 1178.334 kb on - strandat 1178.373 kb on + strandat 1178.414 kb on + strandat 1178.454 kb on - strandat 1178.468 kb on + strandat 1179.062 kb on + strand, within rnpAat 1179.118 kb on - strandat 1179.311 kb on - strand, within DVU1076

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,177,916 - DVU1073 0.49 +0.4
1,177,930 - DVU1073 0.50 -0.1
1,177,930 - DVU1073 0.50 +1.0
1,177,947 + DVU1073 0.52 -0.5
1,177,980 + DVU1073 0.56 -0.5
1,178,006 - DVU1073 0.59 -0.1
1,178,078 - DVU1073 0.66 -0.0
1,178,112 - DVU1073 0.70 -1.5
1,178,153 - DVU1073 0.74 -1.4
1,178,172 - DVU1073 0.76 +0.0
1,178,172 - DVU1073 0.76 +0.0
1,178,205 - DVU1073 0.80 -0.1
1,178,256 - DVU1073 0.86 -0.4
1,178,256 - DVU1073 0.86 +0.2
1,178,256 - DVU1073 0.86 -0.1
1,178,269 + DVU1073 0.87 +0.2
1,178,277 - DVU1073 0.88 -0.2
1,178,277 - DVU1073 0.88 -0.0
1,178,277 - DVU1073 0.88 +0.5
1,178,305 + -0.1
1,178,306 + -0.1
1,178,324 - -0.3
1,178,334 - -0.0
1,178,334 - +0.2
1,178,373 + -2.2
1,178,414 + -2.2
1,178,454 - -0.6
1,178,468 + -0.2
1,179,062 + rnpA DVU1075 0.85 -0.8
1,179,118 - -0.3
1,179,311 - DVU1076 0.80 -0.4

Or see this region's nucleotide sequence