Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1033

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1032 and DORF32294 are separated by 59 nucleotidesDORF32294 and cinA are separated by 250 nucleotidescinA and DVU1034 are separated by 207 nucleotidesDVU1034 and glk overlap by 1 nucleotides DVU1032: DVU1032 - hypothetical protein (TIGR), at 1,135,502 to 1,136,011 DVU1032 DORF32294: DORF32294 - no description, at 1,136,071 to 1,136,193 DORF32294 DVU1033: cinA - competence/damage-inducible protein CinA protein, truncation (TIGR), at 1,136,444 to 1,136,938 cinA DVU1034: DVU1034 - hypothetical protein (TIGR), at 1,137,146 to 1,137,931 DVU1034 DVU1035: glk - glucokinase, putative (TIGR), at 1,137,931 to 1,138,995 glk Position (kb) 1136 1137Strain fitness (log2 ratio) -2 -1 0 1 2at 1135.484 kb on - strandat 1135.580 kb on - strand, within DVU1032at 1135.626 kb on + strand, within DVU1032at 1135.674 kb on - strand, within DVU1032at 1135.674 kb on - strand, within DVU1032at 1135.698 kb on + strand, within DVU1032at 1135.722 kb on - strand, within DVU1032at 1136.101 kb on + strand, within DORF32294at 1136.101 kb on + strand, within DORF32294at 1136.103 kb on + strand, within DORF32294at 1136.124 kb on - strand, within DORF32294at 1136.134 kb on - strand, within DORF32294at 1136.142 kb on + strand, within DORF32294at 1136.158 kb on - strand, within DORF32294at 1136.197 kb on - strandat 1136.391 kb on - strandat 1136.674 kb on - strand, within cinAat 1136.995 kb on + strandat 1137.070 kb on + strandat 1137.096 kb on + strandat 1137.156 kb on + strandat 1137.246 kb on + strand, within DVU1034at 1137.256 kb on - strand, within DVU1034at 1137.308 kb on + strand, within DVU1034at 1137.358 kb on + strand, within DVU1034at 1137.366 kb on - strand, within DVU1034at 1137.366 kb on - strand, within DVU1034at 1137.366 kb on - strand, within DVU1034at 1137.443 kb on + strand, within DVU1034at 1137.683 kb on - strand, within DVU1034at 1137.743 kb on + strand, within DVU1034at 1137.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,135,484 - -0.3
1,135,580 - DVU1032 0.15 -2.1
1,135,626 + DVU1032 0.24 -0.6
1,135,674 - DVU1032 0.34 -1.3
1,135,674 - DVU1032 0.34 +0.0
1,135,698 + DVU1032 0.38 +0.8
1,135,722 - DVU1032 0.43 +1.0
1,136,101 + DORF32294 0.24 +0.1
1,136,101 + DORF32294 0.24 -0.3
1,136,103 + DORF32294 0.26 -0.6
1,136,124 - DORF32294 0.43 -0.4
1,136,134 - DORF32294 0.51 -0.2
1,136,142 + DORF32294 0.58 -0.2
1,136,158 - DORF32294 0.71 -0.1
1,136,197 - -0.3
1,136,391 - -0.6
1,136,674 - cinA DVU1033 0.46 -1.0
1,136,995 + +0.2
1,137,070 + +0.6
1,137,096 + -0.0
1,137,156 + +0.0
1,137,246 + DVU1034 0.13 -0.0
1,137,256 - DVU1034 0.14 -1.1
1,137,308 + DVU1034 0.21 +1.9
1,137,358 + DVU1034 0.27 +0.1
1,137,366 - DVU1034 0.28 +0.5
1,137,366 - DVU1034 0.28 +0.1
1,137,366 - DVU1034 0.28 +0.2
1,137,443 + DVU1034 0.38 +0.4
1,137,683 - DVU1034 0.68 -1.0
1,137,743 + DVU1034 0.76 +0.1
1,137,922 + -2.2

Or see this region's nucleotide sequence