Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0965

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfragments and DVU0965 are separated by 239 nucleotidesDVU0965 and DVU0966 are separated by 94 nucleotides DVU0964: fragments - Glu/Leu/Phe/Val dehydrogenase family protein (TIGR), at 1,059,674 to 1,062,667 fragments DVU0965: DVU0965 - hypothetical protein (TIGR), at 1,062,907 to 1,063,083 DVU0965 DVU0966: DVU0966 - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 1,063,178 to 1,063,996 DVU0966 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -2 -1 0 1at 1061.951 kb on + strand, within fragmentsat 1062.030 kb on + strand, within fragmentsat 1062.082 kb on - strand, within fragmentsat 1062.082 kb on - strand, within fragmentsat 1062.082 kb on - strand, within fragmentsat 1062.082 kb on - strand, within fragmentsat 1062.088 kb on + strand, within fragmentsat 1062.242 kb on - strand, within fragmentsat 1062.269 kb on + strand, within fragmentsat 1062.334 kb on - strand, within fragmentsat 1062.424 kb on + strandat 1062.454 kb on + strandat 1062.705 kb on + strandat 1062.707 kb on + strandat 1062.707 kb on - strandat 1062.754 kb on + strandat 1062.757 kb on - strandat 1062.757 kb on - strandat 1062.897 kb on + strandat 1062.911 kb on - strandat 1062.963 kb on + strand, within DVU0965at 1063.038 kb on - strand, within DVU0965at 1063.060 kb on + strand, within DVU0965at 1063.125 kb on + strandat 1063.126 kb on - strandat 1063.133 kb on - strandat 1063.133 kb on - strandat 1063.133 kb on - strandat 1063.133 kb on - strandat 1063.150 kb on - strandat 1063.184 kb on - strandat 1063.203 kb on - strandat 1063.540 kb on + strand, within DVU0966at 1063.610 kb on + strand, within DVU0966at 1063.615 kb on + strand, within DVU0966at 1063.615 kb on + strand, within DVU0966at 1063.618 kb on - strand, within DVU0966at 1063.618 kb on - strand, within DVU0966at 1063.628 kb on - strand, within DVU0966at 1063.635 kb on - strand, within DVU0966at 1063.684 kb on + strand, within DVU0966at 1063.762 kb on + strand, within DVU0966at 1063.810 kb on + strand, within DVU0966at 1063.810 kb on + strand, within DVU0966at 1063.812 kb on - strand, within DVU0966at 1063.812 kb on - strand, within DVU0966at 1063.818 kb on - strand, within DVU0966at 1063.818 kb on - strand, within DVU0966at 1064.021 kb on - strandat 1064.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,061,951 + fragments DVU0964 0.76 +0.5
1,062,030 + fragments DVU0964 0.79 +0.1
1,062,082 - fragments DVU0964 0.80 +0.6
1,062,082 - fragments DVU0964 0.80 +0.0
1,062,082 - fragments DVU0964 0.80 +0.6
1,062,082 - fragments DVU0964 0.80 +0.5
1,062,088 + fragments DVU0964 0.81 +0.9
1,062,242 - fragments DVU0964 0.86 -1.2
1,062,269 + fragments DVU0964 0.87 -0.1
1,062,334 - fragments DVU0964 0.89 +0.4
1,062,424 + +0.5
1,062,454 + -0.2
1,062,705 + -0.7
1,062,707 + -0.1
1,062,707 - -1.1
1,062,754 + -0.5
1,062,757 - -0.5
1,062,757 - -0.4
1,062,897 + +1.0
1,062,911 - -0.3
1,062,963 + DVU0965 0.32 -0.3
1,063,038 - DVU0965 0.74 -1.1
1,063,060 + DVU0965 0.86 -0.3
1,063,125 + +0.9
1,063,126 - -0.2
1,063,133 - -0.1
1,063,133 - -0.1
1,063,133 - +0.2
1,063,133 - +0.1
1,063,150 - +0.6
1,063,184 - -0.6
1,063,203 - -0.2
1,063,540 + DVU0966 0.44 -0.9
1,063,610 + DVU0966 0.53 +1.1
1,063,615 + DVU0966 0.53 -2.2
1,063,615 + DVU0966 0.53 +0.5
1,063,618 - DVU0966 0.54 +0.2
1,063,618 - DVU0966 0.54 -0.2
1,063,628 - DVU0966 0.55 -0.3
1,063,635 - DVU0966 0.56 -0.3
1,063,684 + DVU0966 0.62 +0.0
1,063,762 + DVU0966 0.71 +0.5
1,063,810 + DVU0966 0.77 -0.1
1,063,810 + DVU0966 0.77 -0.0
1,063,812 - DVU0966 0.77 -0.1
1,063,812 - DVU0966 0.77 +0.0
1,063,818 - DVU0966 0.78 +0.1
1,063,818 - DVU0966 0.78 -0.7
1,064,021 - +0.1
1,064,026 - -0.1

Or see this region's nucleotide sequence