Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0930

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntobg and proB are separated by 17 nucleotidesproB and thiD are separated by 78 nucleotides DVU0929: obg - GTP-binding protein, GTP1/OBG family (TIGR), at 1,018,596 to 1,019,696 obg DVU0930: proB - glutamate 5-kinase (TIGR), at 1,019,714 to 1,020,856 proB DVU0931: thiD - phosphomethylpyrimidine kinase (TIGR), at 1,020,935 to 1,021,741 thiD Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1019.627 kb on - strandat 1019.749 kb on - strandat 1019.975 kb on + strand, within proBat 1019.975 kb on + strand, within proBat 1019.983 kb on - strand, within proBat 1020.305 kb on - strand, within proBat 1020.333 kb on + strand, within proBat 1020.353 kb on + strand, within proBat 1020.411 kb on + strand, within proBat 1020.424 kb on - strand, within proBat 1020.598 kb on - strand, within proBat 1020.668 kb on - strand, within proBat 1020.741 kb on + strand, within proBat 1020.754 kb on + strandat 1020.884 kb on + strandat 1020.899 kb on - strandat 1020.904 kb on + strandat 1020.907 kb on - strandat 1020.912 kb on - strandat 1021.779 kb on - strandat 1021.782 kb on + strandat 1021.822 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,019,627 - -0.1
1,019,749 - -3.3
1,019,975 + proB DVU0930 0.23 -3.1
1,019,975 + proB DVU0930 0.23 -1.4
1,019,983 - proB DVU0930 0.24 -4.0
1,020,305 - proB DVU0930 0.52 -2.0
1,020,333 + proB DVU0930 0.54 -2.0
1,020,353 + proB DVU0930 0.56 -1.9
1,020,411 + proB DVU0930 0.61 -2.7
1,020,424 - proB DVU0930 0.62 -0.0
1,020,598 - proB DVU0930 0.77 -0.7
1,020,668 - proB DVU0930 0.83 -3.6
1,020,741 + proB DVU0930 0.90 -4.2
1,020,754 + -1.7
1,020,884 + +0.4
1,020,899 - -0.2
1,020,904 + -0.4
1,020,907 - +0.2
1,020,912 - -0.2
1,021,779 - +0.2
1,021,782 + +0.1
1,021,822 + +0.3

Or see this region's nucleotide sequence