Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0891 and aroK-1 are separated by 123 nucleotides aroK-1 and DVU0893 are separated by 28 nucleotides DVU0893 and aroC are separated by 190 nucleotides
DVU0891: DVU0891 - aminotransferase, classes I and II (TIGR), at 982,410 to 983,603
DVU0891
DVU0892: aroK-1 - shikimate kinase (TIGR), at 983,727 to 984,254
aroK-1
DVU0893: DVU0893 - universal stress protein family (TIGR), at 984,283 to 984,765
DVU0893
DVU0894: aroC - chorismate synthase (TIGR), at 984,956 to 986,020
aroC
Position (kb) 983
984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 982.754 kb on - strand, within DVU0891 at 982.759 kb on - strand, within DVU0891 at 982.806 kb on - strand, within DVU0891 at 982.822 kb on - strand, within DVU0891 at 982.867 kb on - strand, within DVU0891 at 982.890 kb on - strand, within DVU0891 at 982.942 kb on - strand, within DVU0891 at 983.389 kb on - strand, within DVU0891 at 983.513 kb on - strand at 983.629 kb on + strand at 983.655 kb on - strand at 983.661 kb on + strand at 983.713 kb on + strand at 983.726 kb on - strand at 983.953 kb on - strand, within aroK-1 at 984.079 kb on + strand, within aroK-1 at 984.189 kb on - strand, within aroK-1 at 984.227 kb on - strand at 984.259 kb on + strand at 984.281 kb on - strand at 984.356 kb on + strand, within DVU0893 at 984.377 kb on + strand, within DVU0893 at 984.385 kb on - strand, within DVU0893 at 984.451 kb on + strand, within DVU0893 at 984.515 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.683 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.813 kb on - strand at 984.813 kb on - strand at 984.870 kb on + strand at 984.880 kb on + strand at 984.880 kb on + strand at 984.886 kb on + strand at 984.888 kb on - strand at 984.906 kb on + strand at 985.253 kb on + strand, within aroC
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 982,754 - DVU0891 0.29 -0.0 982,759 - DVU0891 0.29 -1.3 982,806 - DVU0891 0.33 -1.3 982,822 - DVU0891 0.35 -1.2 982,867 - DVU0891 0.38 +1.2 982,890 - DVU0891 0.40 -0.5 982,942 - DVU0891 0.45 -0.8 983,389 - DVU0891 0.82 -1.5 983,513 - -0.7 983,629 + -0.1 983,655 - -0.7 983,661 + -2.0 983,713 + -0.1 983,726 - +0.0 983,953 - aroK-1 DVU0892 0.43 +3.2 984,079 + aroK-1 DVU0892 0.67 -0.8 984,189 - aroK-1 DVU0892 0.88 -3.6 984,227 - -0.0 984,259 + +0.1 984,281 - -0.2 984,356 + DVU0893 0.15 -0.3 984,377 + DVU0893 0.19 -0.6 984,385 - DVU0893 0.21 +1.4 984,451 + DVU0893 0.35 +0.5 984,515 + DVU0893 0.48 -0.1 984,529 + DVU0893 0.51 -0.2 984,529 + DVU0893 0.51 -0.9 984,683 + DVU0893 0.83 +0.1 984,700 + DVU0893 0.86 +1.1 984,700 + DVU0893 0.86 -0.1 984,700 + DVU0893 0.86 -0.2 984,813 - +0.2 984,813 - -1.7 984,870 + +1.9 984,880 + -0.0 984,880 + +0.0 984,886 + -0.8 984,888 - -0.4 984,906 + +0.3 985,253 + aroC DVU0894 0.28 -0.0
Or see this region's nucleotide sequence