Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3676

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3675 and Pf6N2E2_3676 are separated by 396 nucleotidesPf6N2E2_3676 and Pf6N2E2_3677 are separated by 182 nucleotides Pf6N2E2_3675 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 4,280,531 to 4,282,168 _3675 Pf6N2E2_3676 - Phosphodiesterase/alkaline phosphatase D-like, at 4,282,565 to 4,283,956 _3676 Pf6N2E2_3677 - Sensory box/GGDEF family protein, at 4,284,139 to 4,286,832 _3677 Position (kb) 4282 4283 4284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4282.167 kb on - strandat 4282.231 kb on + strandat 4282.429 kb on - strandat 4282.429 kb on - strandat 4282.441 kb on - strandat 4282.441 kb on - strandat 4282.478 kb on + strandat 4282.478 kb on + strandat 4282.478 kb on + strandat 4282.479 kb on - strandat 4282.479 kb on - strandat 4282.482 kb on + strandat 4282.500 kb on - strandat 4282.564 kb on + strandat 4282.564 kb on + strandat 4282.565 kb on - strandat 4282.576 kb on + strandat 4282.577 kb on - strandat 4282.577 kb on - strandat 4282.690 kb on + strandat 4282.877 kb on + strand, within Pf6N2E2_3676at 4282.878 kb on - strand, within Pf6N2E2_3676at 4282.878 kb on - strand, within Pf6N2E2_3676at 4282.878 kb on - strand, within Pf6N2E2_3676at 4282.885 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.923 kb on - strand, within Pf6N2E2_3676at 4282.924 kb on + strand, within Pf6N2E2_3676at 4282.924 kb on + strand, within Pf6N2E2_3676at 4282.924 kb on + strand, within Pf6N2E2_3676at 4282.925 kb on - strand, within Pf6N2E2_3676at 4282.925 kb on - strand, within Pf6N2E2_3676at 4282.925 kb on - strand, within Pf6N2E2_3676at 4282.925 kb on - strand, within Pf6N2E2_3676at 4282.944 kb on - strand, within Pf6N2E2_3676at 4282.974 kb on + strand, within Pf6N2E2_3676at 4282.975 kb on - strand, within Pf6N2E2_3676at 4283.072 kb on + strand, within Pf6N2E2_3676at 4283.073 kb on - strand, within Pf6N2E2_3676at 4283.073 kb on - strand, within Pf6N2E2_3676at 4283.073 kb on - strand, within Pf6N2E2_3676at 4283.073 kb on - strand, within Pf6N2E2_3676at 4283.185 kb on + strand, within Pf6N2E2_3676at 4283.186 kb on - strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.261 kb on + strand, within Pf6N2E2_3676at 4283.291 kb on + strand, within Pf6N2E2_3676at 4283.340 kb on + strand, within Pf6N2E2_3676at 4283.340 kb on + strand, within Pf6N2E2_3676at 4283.341 kb on - strand, within Pf6N2E2_3676at 4283.341 kb on - strand, within Pf6N2E2_3676at 4283.366 kb on + strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.613 kb on + strand, within Pf6N2E2_3676at 4283.614 kb on - strand, within Pf6N2E2_3676at 4283.738 kb on + strand, within Pf6N2E2_3676at 4283.738 kb on + strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.746 kb on + strand, within Pf6N2E2_3676at 4283.747 kb on - strand, within Pf6N2E2_3676at 4283.747 kb on - strand, within Pf6N2E2_3676at 4283.819 kb on + strandat 4283.867 kb on + strandat 4283.868 kb on - strandat 4284.019 kb on + strandat 4284.020 kb on - strandat 4284.021 kb on + strandat 4284.085 kb on + strandat 4284.086 kb on - strandat 4284.086 kb on - strandat 4284.089 kb on - strandat 4284.194 kb on + strandat 4284.195 kb on - strandat 4284.217 kb on - strandat 4284.286 kb on + strandat 4284.306 kb on - strandat 4284.364 kb on + strandat 4284.412 kb on + strand, within Pf6N2E2_3677at 4284.412 kb on + strand, within Pf6N2E2_3677at 4284.412 kb on + strand, within Pf6N2E2_3677at 4284.478 kb on + strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.481 kb on - strand, within Pf6N2E2_3677at 4284.481 kb on - strand, within Pf6N2E2_3677at 4284.536 kb on + strand, within Pf6N2E2_3677at 4284.537 kb on - strand, within Pf6N2E2_3677at 4284.698 kb on - strand, within Pf6N2E2_3677at 4284.698 kb on - strand, within Pf6N2E2_3677at 4284.760 kb on + strand, within Pf6N2E2_3677at 4284.760 kb on + strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.823 kb on + strand, within Pf6N2E2_3677at 4284.844 kb on + strand, within Pf6N2E2_3677at 4284.844 kb on + strand, within Pf6N2E2_3677at 4284.844 kb on + strand, within Pf6N2E2_3677at 4284.845 kb on - strand, within Pf6N2E2_3677at 4284.886 kb on + strand, within Pf6N2E2_3677at 4284.887 kb on - strand, within Pf6N2E2_3677

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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4,282,167 - -2.7
4,282,231 + -0.3
4,282,429 - +0.0
4,282,429 - -1.1
4,282,441 - -0.1
4,282,441 - +0.8
4,282,478 + -0.6
4,282,478 + +0.3
4,282,478 + -0.8
4,282,479 - +0.0
4,282,479 - -0.3
4,282,482 + +0.3
4,282,500 - +0.2
4,282,564 + +0.1
4,282,564 + +0.0
4,282,565 - +1.0
4,282,576 + -0.2
4,282,577 - +1.0
4,282,577 - +0.7
4,282,690 + +0.5
4,282,877 + Pf6N2E2_3676 0.22 +0.2
4,282,878 - Pf6N2E2_3676 0.22 +0.1
4,282,878 - Pf6N2E2_3676 0.22 +0.6
4,282,878 - Pf6N2E2_3676 0.22 +0.3
4,282,885 - Pf6N2E2_3676 0.23 +1.0
4,282,923 - Pf6N2E2_3676 0.26 +0.1
4,282,923 - Pf6N2E2_3676 0.26 +0.4
4,282,923 - Pf6N2E2_3676 0.26 -0.3
4,282,923 - Pf6N2E2_3676 0.26 +0.5
4,282,923 - Pf6N2E2_3676 0.26 -0.5
4,282,923 - Pf6N2E2_3676 0.26 +0.0
4,282,923 - Pf6N2E2_3676 0.26 +0.4
4,282,923 - Pf6N2E2_3676 0.26 -0.2
4,282,923 - Pf6N2E2_3676 0.26 +0.1
4,282,924 + Pf6N2E2_3676 0.26 -0.1
4,282,924 + Pf6N2E2_3676 0.26 -0.7
4,282,924 + Pf6N2E2_3676 0.26 -1.3
4,282,925 - Pf6N2E2_3676 0.26 +1.0
4,282,925 - Pf6N2E2_3676 0.26 +0.4
4,282,925 - Pf6N2E2_3676 0.26 +0.5
4,282,925 - Pf6N2E2_3676 0.26 +0.3
4,282,944 - Pf6N2E2_3676 0.27 +0.8
4,282,974 + Pf6N2E2_3676 0.29 +1.1
4,282,975 - Pf6N2E2_3676 0.29 -0.5
4,283,072 + Pf6N2E2_3676 0.36 -0.7
4,283,073 - Pf6N2E2_3676 0.36 -0.4
4,283,073 - Pf6N2E2_3676 0.36 -1.5
4,283,073 - Pf6N2E2_3676 0.36 +1.1
4,283,073 - Pf6N2E2_3676 0.36 +0.1
4,283,185 + Pf6N2E2_3676 0.45 +1.5
4,283,186 - Pf6N2E2_3676 0.45 -0.4
4,283,189 + Pf6N2E2_3676 0.45 +0.6
4,283,189 + Pf6N2E2_3676 0.45 +0.7
4,283,189 + Pf6N2E2_3676 0.45 -1.5
4,283,189 + Pf6N2E2_3676 0.45 +0.1
4,283,189 + Pf6N2E2_3676 0.45 -1.0
4,283,189 + Pf6N2E2_3676 0.45 +0.5
4,283,189 + Pf6N2E2_3676 0.45 +0.3
4,283,189 + Pf6N2E2_3676 0.45 +1.5
4,283,189 + Pf6N2E2_3676 0.45 +1.5
4,283,190 - Pf6N2E2_3676 0.45 -0.4
4,283,190 - Pf6N2E2_3676 0.45 -1.7
4,283,190 - Pf6N2E2_3676 0.45 +0.2
4,283,190 - Pf6N2E2_3676 0.45 -0.0
4,283,190 - Pf6N2E2_3676 0.45 -0.3
4,283,190 - Pf6N2E2_3676 0.45 +0.1
4,283,190 - Pf6N2E2_3676 0.45 -0.0
4,283,190 - Pf6N2E2_3676 0.45 -0.6
4,283,261 + Pf6N2E2_3676 0.50 -0.0
4,283,291 + Pf6N2E2_3676 0.52 -1.3
4,283,340 + Pf6N2E2_3676 0.56 -1.1
4,283,340 + Pf6N2E2_3676 0.56 -1.6
4,283,341 - Pf6N2E2_3676 0.56 -0.0
4,283,341 - Pf6N2E2_3676 0.56 -0.7
4,283,366 + Pf6N2E2_3676 0.58 -0.2
4,283,367 - Pf6N2E2_3676 0.58 -0.0
4,283,367 - Pf6N2E2_3676 0.58 +0.0
4,283,367 - Pf6N2E2_3676 0.58 +0.5
4,283,367 - Pf6N2E2_3676 0.58 +0.1
4,283,613 + Pf6N2E2_3676 0.75 -0.1
4,283,614 - Pf6N2E2_3676 0.75 +0.1
4,283,738 + Pf6N2E2_3676 0.84 -0.1
4,283,738 + Pf6N2E2_3676 0.84 -0.4
4,283,739 - Pf6N2E2_3676 0.84 +0.9
4,283,739 - Pf6N2E2_3676 0.84 +0.7
4,283,739 - Pf6N2E2_3676 0.84 +0.2
4,283,739 - Pf6N2E2_3676 0.84 +0.7
4,283,746 + Pf6N2E2_3676 0.85 -0.5
4,283,747 - Pf6N2E2_3676 0.85 +0.6
4,283,747 - Pf6N2E2_3676 0.85 +0.9
4,283,819 + +0.3
4,283,867 + -0.1
4,283,868 - -0.6
4,284,019 + +0.4
4,284,020 - +1.2
4,284,021 + +1.8
4,284,085 + +1.1
4,284,086 - +0.1
4,284,086 - -0.0
4,284,089 - -0.7
4,284,194 + +0.1
4,284,195 - -2.3
4,284,217 - -0.5
4,284,286 + -1.1
4,284,306 - -1.6
4,284,364 + -2.0
4,284,412 + Pf6N2E2_3677 0.10 +0.1
4,284,412 + Pf6N2E2_3677 0.10 -0.8
4,284,412 + Pf6N2E2_3677 0.10 -0.9
4,284,478 + Pf6N2E2_3677 0.13 -1.0
4,284,479 - Pf6N2E2_3677 0.13 -2.5
4,284,479 - Pf6N2E2_3677 0.13 -0.7
4,284,479 - Pf6N2E2_3677 0.13 -2.5
4,284,479 - Pf6N2E2_3677 0.13 -2.3
4,284,479 - Pf6N2E2_3677 0.13 -2.6
4,284,479 - Pf6N2E2_3677 0.13 -0.8
4,284,479 - Pf6N2E2_3677 0.13 -0.6
4,284,479 - Pf6N2E2_3677 0.13 -1.5
4,284,479 - Pf6N2E2_3677 0.13 -1.1
4,284,479 - Pf6N2E2_3677 0.13 -0.5
4,284,479 - Pf6N2E2_3677 0.13 -1.5
4,284,481 - Pf6N2E2_3677 0.13 -3.9
4,284,481 - Pf6N2E2_3677 0.13 -1.3
4,284,536 + Pf6N2E2_3677 0.15 -0.6
4,284,537 - Pf6N2E2_3677 0.15 -0.9
4,284,698 - Pf6N2E2_3677 0.21 -1.8
4,284,698 - Pf6N2E2_3677 0.21 -1.1
4,284,760 + Pf6N2E2_3677 0.23 -1.4
4,284,760 + Pf6N2E2_3677 0.23 -1.2
4,284,761 - Pf6N2E2_3677 0.23 -0.9
4,284,761 - Pf6N2E2_3677 0.23 -1.3
4,284,761 - Pf6N2E2_3677 0.23 -1.3
4,284,761 - Pf6N2E2_3677 0.23 -1.7
4,284,761 - Pf6N2E2_3677 0.23 -1.3
4,284,761 - Pf6N2E2_3677 0.23 -2.7
4,284,823 + Pf6N2E2_3677 0.25 -1.3
4,284,844 + Pf6N2E2_3677 0.26 -1.9
4,284,844 + Pf6N2E2_3677 0.26 -0.8
4,284,844 + Pf6N2E2_3677 0.26 -1.3
4,284,845 - Pf6N2E2_3677 0.26 +0.2
4,284,886 + Pf6N2E2_3677 0.28 -0.9
4,284,887 - Pf6N2E2_3677 0.28 +0.7

Or see this region's nucleotide sequence