Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01994 and CCNA_01995 overlap by 13 nucleotides CCNA_01995 and CCNA_01996 overlap by 41 nucleotides CCNA_01996 and CCNA_01997 are separated by 51 nucleotides CCNA_01997 and CCNA_01998 are separated by 26 nucleotides
CCNA_01994: CCNA_01994 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,140,916 to 2,142,115
_01994
CCNA_01995: CCNA_01995 - phosphatidate cytidylyltransferase, at 2,142,103 to 2,142,948
_01995
CCNA_01996: CCNA_01996 - undecaprenyl pyrophosphate synthetase, at 2,142,908 to 2,143,687
_01996
CCNA_01997: CCNA_01997 - ribosome recycling factor (RRF), at 2,143,739 to 2,144,305
_01997
CCNA_01998: CCNA_01998 - uridylate kinase, at 2,144,332 to 2,145,072
_01998
Position (kb)
2142
2143
2144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2142.113 kb on + strand at 2142.337 kb on - strand, within CCNA_01995 at 2142.337 kb on - strand, within CCNA_01995 at 2142.904 kb on - strand at 2143.710 kb on - strand at 2143.737 kb on + strand at 2144.324 kb on - strand at 2144.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,142,113 + +2.8 2,142,337 - CCNA_01995 0.28 -2.2 2,142,337 - CCNA_01995 0.28 -1.5 2,142,904 - +0.4 2,143,710 - +0.8 2,143,737 + -0.3 2,144,324 - +1.1 2,144,362 - +0.8
Or see this region's nucleotide sequence