Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0438 and DVU0439 are separated by 34 nucleotides DVU0439 and DVU0440 are separated by 468 nucleotides DVU0440 and ade are separated by 150 nucleotides
DVU0438: DVU0438 - AcrB/AcrD/AcrF family protein (TIGR), at 492,212 to 495,337
DVU0438
DVU0439: DVU0439 - YCII-related domain protein (TIGR), at 495,372 to 495,662
DVU0439
DVU0440: DVU0440 - conserved hypothetical protein (TIGR), at 496,131 to 497,462
DVU0440
DVU0441: ade - adenine deaminase (TIGR), at 497,613 to 499,340
ade
Position (kb) 496
497
498 Strain fitness (log2 ratio) -2
-1
0
1
2 at 495.131 kb on + strand at 495.190 kb on - strand at 495.220 kb on + strand at 495.235 kb on + strand at 495.243 kb on - strand at 495.243 kb on - strand at 495.243 kb on - strand at 495.308 kb on + strand at 495.420 kb on + strand, within DVU0439 at 495.421 kb on - strand, within DVU0439 at 495.484 kb on - strand, within DVU0439 at 495.496 kb on + strand, within DVU0439 at 495.515 kb on - strand, within DVU0439 at 495.581 kb on + strand, within DVU0439 at 495.581 kb on + strand, within DVU0439 at 495.866 kb on - strand at 495.918 kb on + strand at 495.921 kb on + strand at 495.949 kb on + strand at 495.957 kb on - strand at 496.018 kb on + strand at 496.023 kb on + strand at 496.026 kb on - strand at 496.031 kb on - strand at 496.031 kb on - strand at 496.180 kb on + strand at 496.183 kb on - strand at 496.194 kb on - strand at 496.199 kb on + strand at 496.226 kb on + strand at 496.234 kb on - strand at 496.255 kb on - strand at 496.265 kb on + strand, within DVU0440 at 496.275 kb on + strand, within DVU0440 at 496.313 kb on + strand, within DVU0440 at 496.345 kb on + strand, within DVU0440 at 496.352 kb on - strand, within DVU0440 at 496.368 kb on - strand, within DVU0440 at 496.405 kb on - strand, within DVU0440 at 496.418 kb on - strand, within DVU0440 at 496.422 kb on + strand, within DVU0440 at 496.468 kb on - strand, within DVU0440 at 496.483 kb on - strand, within DVU0440 at 496.505 kb on - strand, within DVU0440 at 496.505 kb on - strand, within DVU0440 at 496.505 kb on - strand, within DVU0440 at 496.507 kb on + strand, within DVU0440 at 496.512 kb on + strand, within DVU0440 at 496.515 kb on - strand, within DVU0440 at 496.550 kb on - strand, within DVU0440 at 496.609 kb on + strand, within DVU0440 at 496.738 kb on - strand, within DVU0440 at 496.785 kb on + strand, within DVU0440 at 496.793 kb on - strand, within DVU0440 at 496.793 kb on - strand, within DVU0440 at 496.842 kb on + strand, within DVU0440 at 496.842 kb on + strand, within DVU0440 at 496.843 kb on + strand, within DVU0440 at 496.850 kb on - strand, within DVU0440 at 496.850 kb on - strand, within DVU0440 at 496.850 kb on - strand, within DVU0440 at 496.875 kb on + strand, within DVU0440 at 496.947 kb on + strand, within DVU0440 at 497.093 kb on + strand, within DVU0440 at 497.137 kb on + strand, within DVU0440 at 497.146 kb on - strand, within DVU0440 at 497.192 kb on - strand, within DVU0440 at 497.271 kb on - strand, within DVU0440 at 497.307 kb on + strand, within DVU0440 at 497.317 kb on - strand, within DVU0440 at 497.351 kb on + strand at 497.524 kb on - strand at 497.585 kb on - strand at 497.611 kb on + strand at 497.721 kb on + strand at 497.782 kb on - strand at 497.787 kb on + strand, within ade at 497.811 kb on + strand, within ade at 497.870 kb on + strand, within ade at 497.878 kb on - strand, within ade at 497.955 kb on - strand, within ade at 498.020 kb on + strand, within ade at 498.037 kb on + strand, within ade at 498.090 kb on + strand, within ade at 498.119 kb on + strand, within ade at 498.127 kb on - strand, within ade at 498.137 kb on + strand, within ade at 498.157 kb on + strand, within ade at 498.175 kb on + strand, within ade at 498.204 kb on + strand, within ade at 498.219 kb on + strand, within ade at 498.307 kb on + strand, within ade at 498.398 kb on + strand, within ade at 498.415 kb on + strand, within ade at 498.432 kb on + strand, within ade at 498.440 kb on - strand, within ade
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 495,131 + -2.1 495,190 - -1.9 495,220 + -0.6 495,235 + -2.0 495,243 - -2.3 495,243 - -2.4 495,243 - -2.3 495,308 + -1.4 495,420 + DVU0439 0.16 +0.1 495,421 - DVU0439 0.17 -0.6 495,484 - DVU0439 0.38 +0.6 495,496 + DVU0439 0.43 -0.4 495,515 - DVU0439 0.49 -1.1 495,581 + DVU0439 0.72 +0.2 495,581 + DVU0439 0.72 -0.9 495,866 - +0.7 495,918 + -0.0 495,921 + +0.8 495,949 + +0.7 495,957 - +0.2 496,018 + -0.2 496,023 + +0.0 496,026 - -0.1 496,031 - -0.5 496,031 - -0.1 496,180 + -0.4 496,183 - +0.1 496,194 - -0.7 496,199 + +0.1 496,226 + -1.3 496,234 - -1.4 496,255 - -0.1 496,265 + DVU0440 0.10 -0.3 496,275 + DVU0440 0.11 -0.3 496,313 + DVU0440 0.14 +0.1 496,345 + DVU0440 0.16 -0.3 496,352 - DVU0440 0.17 +0.3 496,368 - DVU0440 0.18 +0.5 496,405 - DVU0440 0.21 -0.1 496,418 - DVU0440 0.22 -0.7 496,422 + DVU0440 0.22 +0.7 496,468 - DVU0440 0.25 +0.0 496,483 - DVU0440 0.26 -0.8 496,505 - DVU0440 0.28 +0.4 496,505 - DVU0440 0.28 -0.4 496,505 - DVU0440 0.28 +1.5 496,507 + DVU0440 0.28 +0.6 496,512 + DVU0440 0.29 +0.4 496,515 - DVU0440 0.29 -0.2 496,550 - DVU0440 0.31 +1.7 496,609 + DVU0440 0.36 -0.1 496,738 - DVU0440 0.46 -0.4 496,785 + DVU0440 0.49 -0.0 496,793 - DVU0440 0.50 -0.1 496,793 - DVU0440 0.50 +0.1 496,842 + DVU0440 0.53 -0.1 496,842 + DVU0440 0.53 -0.2 496,843 + DVU0440 0.53 -0.2 496,850 - DVU0440 0.54 +0.1 496,850 - DVU0440 0.54 -0.3 496,850 - DVU0440 0.54 -0.2 496,875 + DVU0440 0.56 -0.8 496,947 + DVU0440 0.61 -0.9 497,093 + DVU0440 0.72 -1.0 497,137 + DVU0440 0.76 -0.1 497,146 - DVU0440 0.76 -0.4 497,192 - DVU0440 0.80 +0.5 497,271 - DVU0440 0.86 +0.1 497,307 + DVU0440 0.88 -0.3 497,317 - DVU0440 0.89 -0.5 497,351 + +0.4 497,524 - +0.6 497,585 - -0.0 497,611 + +0.3 497,721 + -0.5 497,782 - -0.5 497,787 + ade DVU0441 0.10 +1.5 497,811 + ade DVU0441 0.11 -1.2 497,870 + ade DVU0441 0.15 -0.0 497,878 - ade DVU0441 0.15 -1.8 497,955 - ade DVU0441 0.20 +1.8 498,020 + ade DVU0441 0.24 -0.5 498,037 + ade DVU0441 0.25 -0.2 498,090 + ade DVU0441 0.28 +1.2 498,119 + ade DVU0441 0.29 +0.4 498,127 - ade DVU0441 0.30 +0.1 498,137 + ade DVU0441 0.30 +0.1 498,157 + ade DVU0441 0.31 +0.4 498,175 + ade DVU0441 0.33 -1.5 498,204 + ade DVU0441 0.34 -0.2 498,219 + ade DVU0441 0.35 +0.2 498,307 + ade DVU0441 0.40 -2.5 498,398 + ade DVU0441 0.45 +0.1 498,415 + ade DVU0441 0.46 +1.6 498,432 + ade DVU0441 0.47 -0.8 498,440 - ade DVU0441 0.48 -0.7
Or see this region's nucleotide sequence