Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0338

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0337 and DVU0338 are separated by 19 nucleotidesDVU0338 and serA are separated by 29 nucleotides DVU0337: DVU0337 - hypothetical protein (TIGR), at 382,107 to 384,077 DVU0337 DVU0338: DVU0338 - hydrolase, haloacid dehalogenase-like family (TIGR), at 384,097 to 384,738 DVU0338 DVU0339: serA - D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR), at 384,768 to 385,673 serA Position (kb) 384 385Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 384.026 kb on - strandat 384.026 kb on - strandat 384.121 kb on - strandat 384.771 kb on + strandat 384.779 kb on - strandat 384.833 kb on - strandat 384.865 kb on + strand, within serAat 384.865 kb on + strand, within serAat 384.873 kb on - strand, within serAat 384.899 kb on - strand, within serAat 384.900 kb on - strand, within serAat 384.962 kb on + strand, within serAat 385.034 kb on - strand, within serAat 385.075 kb on - strand, within serAat 385.080 kb on - strand, within serAat 385.101 kb on + strand, within serAat 385.101 kb on + strand, within serAat 385.101 kb on + strand, within serAat 385.123 kb on + strand, within serAat 385.147 kb on + strand, within serAat 385.147 kb on + strand, within serAat 385.177 kb on - strand, within serAat 385.191 kb on - strand, within serAat 385.254 kb on - strand, within serAat 385.269 kb on - strand, within serAat 385.325 kb on + strand, within serAat 385.326 kb on + strand, within serAat 385.333 kb on + strand, within serAat 385.333 kb on + strand, within serAat 385.341 kb on - strand, within serAat 385.431 kb on + strand, within serAat 385.431 kb on + strand, within serAat 385.431 kb on + strand, within serAat 385.439 kb on - strand, within serAat 385.439 kb on - strand, within serAat 385.439 kb on - strand, within serAat 385.439 kb on - strand, within serAat 385.439 kb on - strand, within serAat 385.530 kb on + strand, within serAat 385.617 kb on + strandat 385.625 kb on - strandat 385.625 kb on - strandat 385.686 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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384,026 - +0.3
384,026 - -0.2
384,121 - -0.0
384,771 + -0.3
384,779 - -0.7
384,833 - +2.7
384,865 + serA DVU0339 0.11 +1.0
384,865 + serA DVU0339 0.11 +2.5
384,873 - serA DVU0339 0.12 +2.9
384,899 - serA DVU0339 0.14 +2.5
384,900 - serA DVU0339 0.15 +2.9
384,962 + serA DVU0339 0.21 +1.0
385,034 - serA DVU0339 0.29 +2.7
385,075 - serA DVU0339 0.34 +2.6
385,080 - serA DVU0339 0.34 +2.0
385,101 + serA DVU0339 0.37 +2.6
385,101 + serA DVU0339 0.37 +2.8
385,101 + serA DVU0339 0.37 +2.8
385,123 + serA DVU0339 0.39 +3.1
385,147 + serA DVU0339 0.42 +2.6
385,147 + serA DVU0339 0.42 +3.0
385,177 - serA DVU0339 0.45 +1.9
385,191 - serA DVU0339 0.47 +1.7
385,254 - serA DVU0339 0.54 +2.0
385,269 - serA DVU0339 0.55 +2.8
385,325 + serA DVU0339 0.61 +2.6
385,326 + serA DVU0339 0.62 +2.1
385,333 + serA DVU0339 0.62 +3.9
385,333 + serA DVU0339 0.62 +2.1
385,341 - serA DVU0339 0.63 +3.1
385,431 + serA DVU0339 0.73 +2.7
385,431 + serA DVU0339 0.73 +3.2
385,431 + serA DVU0339 0.73 +2.1
385,439 - serA DVU0339 0.74 -2.2
385,439 - serA DVU0339 0.74 +3.1
385,439 - serA DVU0339 0.74 +2.1
385,439 - serA DVU0339 0.74 +2.2
385,439 - serA DVU0339 0.74 +2.7
385,530 + serA DVU0339 0.84 +2.2
385,617 + +3.1
385,625 - +3.1
385,625 - +2.4
385,686 + -0.0

Or see this region's nucleotide sequence